Recent advances in predicting protein–protein interactions with the aid of artificial intelligence algorithms
Protein–protein interactions (PPIs) are essential in the regulation of biological functions and
cell events, therefore understanding PPIs have become a key issue to understanding the …
cell events, therefore understanding PPIs have become a key issue to understanding the …
Integrating multi-omics to unravel host-microbiome interactions in inflammatory bowel disease
Y Zhang, JP Thomas, T Korcsmaros, L Gul - Cell Reports Medicine, 2024 - cell.com
The gut microbiome is crucial for nutrient metabolism, immune regulation, and intestinal
homeostasis with changes in its composition linked to complex diseases like inflammatory …
homeostasis with changes in its composition linked to complex diseases like inflammatory …
HPIDB 2.0: a curated database for host–pathogen interactions
MG Ammari, CR Gresham, FM McCarthy, B Nanduri - Database, 2016 - academic.oup.com
Identification and analysis of host–pathogen interactions (HPI) is essential to study infectious
diseases. However, HPI data are sparse in existing molecular interaction databases …
diseases. However, HPI data are sparse in existing molecular interaction databases …
HVIDB: a comprehensive database for human–virus protein–protein interactions
While leading to millions of people's deaths every year the treatment of viral infectious
diseases remains a huge public health challenge. Therefore, an in-depth understanding of …
diseases remains a huge public health challenge. Therefore, an in-depth understanding of …
Transfer learning via multi-scale convolutional neural layers for human–virus protein–protein interaction prediction
Motivation To complement experimental efforts, machine learning-based computational
methods are playing an increasingly important role to predict human–virus protein–protein …
methods are playing an increasingly important role to predict human–virus protein–protein …
A review on computational systems biology of pathogen–host interactions
Pathogens manipulate the cellular mechanisms of host organisms via pathogen–host
interactions (PHIs) in order to take advantage of the capabilities of host cells, leading to …
interactions (PHIs) in order to take advantage of the capabilities of host cells, leading to …
Computational approaches for prediction of pathogen-host protein-protein interactions
Infectious diseases are still among the major and prevalent health problems, mostly
because of the drug resistance of novel variants of pathogens. Molecular interactions …
because of the drug resistance of novel variants of pathogens. Molecular interactions …
Artificial intelligence applications in the diagnosis and treatment of bacterial infections
X Zhang, D Zhang, X Zhang, X Zhang - Frontiers in Microbiology, 2024 - frontiersin.org
The diagnosis and treatment of bacterial infections in the medical and public health field in
the 21st century remain significantly challenging. Artificial Intelligence (AI) has emerged as a …
the 21st century remain significantly challenging. Artificial Intelligence (AI) has emerged as a …
Dissection of hubs and bottlenecks in a protein-protein interaction network
Abstract Analysis of degree centrality in conjunction with betweenness centrality of proteins
in a human protein-protein interaction network revealed three categories of centrally …
in a human protein-protein interaction network revealed three categories of centrally …
Network representations of immune system complexity
N Subramanian, P Torabi‐Parizi… - … Systems Biology and …, 2015 - Wiley Online Library
The mammalian immune system is a dynamic multiscale system composed of a
hierarchically organized set of molecular, cellular, and organismal networks that act in …
hierarchically organized set of molecular, cellular, and organismal networks that act in …