Ribosomal stalling during translation: providing substrates for ribosome-associated protein quality control

CAP Joazeiro - Annual review of cell and developmental biology, 2017 - annualreviews.org
Cells of all organisms survey problems during translation elongation, which may happen as
a consequence of mRNA aberrations, inefficient decoding, or other sources. In eukaryotes …

Ribosome rescue pathways in bacteria

C Müller, C Crowe-McAuliffe, DN Wilson - Frontiers in microbiology, 2021 - frontiersin.org
Ribosomes that become stalled on truncated or damaged mRNAs during protein synthesis
must be rescued for the cell to survive. Bacteria have evolved a diverse array of rescue …

The structural basis for release factor activation during translation termination revealed by time-resolved cryogenic electron microscopy

Z Fu, G Indrisiunaite, S Kaledhonkar, B Shah, M Sun… - Biophysical …, 2019 - cell.com
Upon encountering a stop codon in the aminoacyl site (A site) of the mRNA translating
ribosome, the ribosome recruits a class-1 release factor (RF), which induces hydrolysis of …

Schrödinger's T cells: molecular insights into stemness and exhaustion

NM Gonzalez, D Zou, A Gu, W Chen - Frontiers in immunology, 2021 - frontiersin.org
T cell stemness and exhaustion coexist as two key contrasting phenomena during chronic
antigen stimulation, such as infection, transplant, cancer, and autoimmunity. T cell …

Mechanistic insights into the alternative ribosome recycling by HflXr

SM Seely, RS Basu, MG Gagnon - Nucleic Acids Research, 2024 - academic.oup.com
During stress conditions such as heat shock and antibiotic exposure, ribosomes stall on
messenger RNAs, leading to inhibition of protein synthesis. To remobilize ribosomes …

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

N Shimokawa-Chiba, C Müller, K Fujiwara… - Nature …, 2019 - nature.com
Rescue of the ribosomes from dead-end translation complexes, such as those on truncated
(non-stop) mRNA, is essential for the cell. Whereas bacteria use trans-translation for …

Prophage excision switches the primary ribosome rescue pathway and rescue‐associated gene regulations in Escherichia coli

H Onodera, T Niwa, H Taguchi… - Molecular …, 2023 - Wiley Online Library
Escherichia coli has multiple pathways to release nonproductive ribosome complexes
stalled at the 3′ end of nonstop mRNA: tmRNA (SsrA RNA)‐mediated trans‐translation and …

Mechanism of ribosome rescue by ArfA and RF2

G Demo, E Svidritskiy, R Madireddy, R Diaz-Avalos… - Elife, 2017 - elifesciences.org
ArfA rescues ribosomes stalled on truncated mRNAs by recruiting release factor RF2, which
normally binds stop codons to catalyze peptide release. We report two 3.2 Å resolution cryo …

Structural basis for ribosome rescue in bacteria

P Huter, C Müller, S Arenz, B Beckert… - Trends in biochemical …, 2017 - cell.com
Ribosomes that translate mRNAs lacking stop codons become stalled at the 3′ end of the
mRNA. Recycling of these stalled ribosomes is essential for cell viability. In bacteria three …

ArfB can displace mRNA to rescue stalled ribosomes

CE Carbone, G Demo, R Madireddy… - Nature …, 2020 - nature.com
Ribosomes stalled during translation must be rescued to replenish the pool of translation-
competent ribosomal subunits. Bacterial alternative rescue factor B (ArfB) releases nascent …