Engineering biological nanopore approaches toward protein sequencing

X Wei, T Penkauskas, JE Reiner, C Kennard… - ACS …, 2023 - ACS Publications
Biotechnological innovations have vastly improved the capacity to perform large-scale
protein studies, while the methods we have for identifying and quantifying individual proteins …

Nanopore DNA sequencing technologies and their applications towards single-molecule proteomics

A Dorey, S Howorka - Nature chemistry, 2024 - nature.com
Sequencing of nucleic acids with nanopores has emerged as a powerful tool offering rapid
readout, high accuracy, low cost and portability. This label-free method for sequencing at the …

Evaluating the performance of the astral mass analyzer for quantitative proteomics using data-independent acquisition

LR Heil, E Damoc, TN Arrey, A Pashkova… - Journal of proteome …, 2023 - ACS Publications
We evaluate the quantitative performance of the newly released Asymmetric Track Lossless
(Astral) analyzer. Using data-independent acquisition, the Thermo Scientific Orbitrap Astral …

An introduction to mass spectrometry-based proteomics

SR Shuken - Journal of Proteome Research, 2023 - ACS Publications
Mass spectrometry is unmatched in its versatility for studying practically any aspect of the
proteome. Because the foundations of mass spectrometry-based proteomics are complex …

Unidirectional single-file transport of full-length proteins through a nanopore

L Yu, X Kang, F Li, B Mehrafrooz, A Makhamreh… - Nature …, 2023 - nature.com
The electrical current blockade of a peptide or protein threading through a nanopore can be
used as a fingerprint of the molecule in biosensor applications. However, threading of full …

Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

Spatial multi-omics: novel tools to study the complexity of cardiovascular diseases

P Kiessling, C Kuppe - Genome Medicine, 2024 - Springer
Spatial multi-omic studies have emerged as a promising approach to comprehensively
analyze cells in tissues, enabling the joint analysis of multiple data modalities like …

Deciphering the protein ubiquitylation system in plants

Z Hua - Journal of Experimental Botany, 2023 - academic.oup.com
Protein ubiquitylation is a post-translational modification (PTM) process that covalently
modifies a protein substrate with either mono-ubiquitin moieties or poly-ubiquitin chains …

Microfluidics coupled mass spectrometry for single cell multi‐omics

D Zhang, L Qiao - Small Methods, 2024 - Wiley Online Library
Population‐level analysis masks significant heterogeneity between individual cells, making
it difficult to accurately reflect the true intricacies of life activities. Microfluidics is a technique …

Dynamics of single-cell protein covariation during epithelial–mesenchymal transition

S Khan, R Conover, AR Asthagiri… - Journal of Proteome …, 2024 - ACS Publications
Physiological processes, such as the epithelial–mesenchymal transition (EMT), are
mediated by changes in protein interactions. These changes may be better reflected in …