Next-generation sequencing for confronting virus pandemics

J Quer, S Colomer-Castell, C Campos, C Andrés… - Viruses, 2022 - mdpi.com
Virus pandemics have happened, are happening and will happen again. In recent decades,
the rate of zoonotic viral spillover into humans has accelerated, mirroring the expansion of …

The role of RASs/RVs in the current management of HCV

K Malandris, G Kalopitas, E Theocharidou… - Viruses, 2021 - mdpi.com
The approval of combination therapies with direct-acting antiviral (DAA) regimens has led to
significant progress in the field of hepatitis C virus (HCV) treatment. Although most patients …

SARS-CoV-2 mutant spectra at different depth levels reveal an overwhelming abundance of low frequency mutations

B Martínez-González, ME Soria, L Vázquez-Sirvent… - Pathogens, 2022 - mdpi.com
Populations of RNA viruses are composed of complex and dynamic mixtures of variant
genomes that are termed mutant spectra or mutant clouds. This applies also to SARS-CoV …

Deep-sequencing reveals broad subtype-specific HCV resistance mutations associated with treatment failure

Q Chen, C Perales, ME Soria, D García-Cehic… - Antiviral Research, 2020 - Elsevier
A percentage of hepatitis C virus (HCV)-infected patients fail direct acting antiviral (DAA)-
based treatment regimens, often because of drug resistance-associated substitutions (RAS) …

Atypical mutational spectrum of SARS-CoV-2 replicating in the presence of ribavirin

P Somovilla, C García-Crespo… - Antimicrobial Agents …, 2023 - Am Soc Microbiol
We report that ribavirin exerts an inhibitory and mutagenic activity on SARS-CoV-2-infecting
Vero cells, with a therapeutic index higher than 10. Deep sequencing analysis of the mutant …

SARS-CoV-2 point mutation and deletion spectra and their association with different disease outcomes

B Martínez-González, ME Soria… - Microbiology …, 2022 - Am Soc Microbiol
Mutant spectra of RNA viruses are important to understand viral pathogenesis and response
to selective pressures. There is a need to characterize the complexity of mutant spectra in …

Synergism between remdesivir and ribavirin leads to SARS‐CoV‐2 extinction in cell culture

C García‐Crespo, AI de Ávila, I Gallego… - British journal of …, 2024 - Wiley Online Library
Background and Purpose There is a need for effective anti‐COVID‐19 treatments, mainly for
individuals at risk of severe disease such as the elderly and the immunosuppressed. Drug …

[HTML][HTML] Direct-acting antiviral in the treatment of chronic hepatitis C: bonuses and challenges

H Zeng, L Li, Z Hou, Y Zhang, Z Tang… - International Journal of …, 2020 - ncbi.nlm.nih.gov
Owing to the rapid development and wide clinical application of direct acting antiviral (DAA)
drugs in the treatment of hepatitis C virus (HCV) infection, the era of interferon-based …

Host-dependent editing of SARS-CoV-2 in COVID-19 patients

J Gregori, MF Cortese, M Piñana… - Emerging microbes & …, 2021 - Taylor & Francis
ABSTRACT A common trait among RNA viruses is their high capability to acquire genetic
variability due to viral and host mechanisms. Next-generation sequencing (NGS) analysis …

In-Host Flat-like Quasispecies: Characterization Methods and Clinical Implications

J Gregori, S Colomer-Castell, M Ibañez-Lligoña… - Microorganisms, 2024 - mdpi.com
The repeated failure to treat patients chronically infected with hepatitis E (HEV) and C (HCV)
viruses, despite the absence of resistance-associated substitutions (RAS), particularly in …