The role of soil microorganisms in plant mineral nutrition—current knowledge and future directions

R Jacoby, M Peukert, A Succurro, A Koprivova… - Frontiers in plant …, 2017 - frontiersin.org
In their natural environment, plants are part of a rich ecosystem including numerous and
diverse microorganisms in the soil. It has been long recognized that some of these microbes …

The evolution of polystyrene as a cell culture material

MJ Lerman, J Lembong, S Muramoto… - … Engineering Part B …, 2018 - liebertpub.com
Polystyrene (PS) has brought in vitro cell culture from its humble beginnings to the modern
era, propelling dozens of research fields along the way. This review discusses the …

Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods

NE Lewis, H Nagarajan, BO Palsson - Nature Reviews Microbiology, 2012 - nature.com
Reconstructed microbial metabolic networks facilitate a mechanistic description of the
genotype–phenotype relationship through the deployment of constraint-based …

Applications of genome‐scale metabolic reconstructions

MA Oberhardt, BØ Palsson, JA Papin - Molecular systems biology, 2009 - embopress.org
The availability and utility of genome‐scale metabolic reconstructions have exploded since
the first genome‐scale reconstruction was published a decade ago. Reconstructions have …

Design and analysis of synthetic carbon fixation pathways

A Bar-Even, E Noor, NE Lewis… - Proceedings of the …, 2010 - National Acad Sciences
Carbon fixation is the process by which CO2 is incorporated into organic compounds. In
modern agriculture in which water, light, and nutrients can be abundant, carbon fixation …

Robustness of cellular functions

J Stelling, U Sauer, Z Szallasi, FJ Doyle, J Doyle - Cell, 2004 - cell.com
Robustness, the ability to maintain performance in the face of perturbations and uncertainty,
is a long-recognized key property of living systems. Owing to intimate links to cellular …

Genome-scale models of microbial cells: evaluating the consequences of constraints

ND Price, JL Reed, BØ Palsson - Nature Reviews Microbiology, 2004 - nature.com
Microbial cells operate under governing constraints that limit their range of possible
functions. With the availability of annotated genome sequences, it has become possible to …

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson… - Nature protocols, 2007 - nature.com
The manner in which microorganisms utilize their metabolic processes can be predicted
using constraint-based analysis of genome-scale metabolic networks. Herein, we present …

[图书][B] Systems biology: properties of reconstructed networks

BØ Palsson - 2006 - books.google.com
Genome sequences are now available that enable us to determine the biological
components that make up a cell or an organism. The discipline of systems biology examines …

Computational and statistical analysis of metabolomics data

S Ren, AA Hinzman, EL Kang, RD Szczesniak, LJ Lu - Metabolomics, 2015 - Springer
Metabolomics is the comprehensive study of small molecule metabolites in biological
systems. By assaying and analyzing thousands of metabolites in biological samples, it …