Advances in mRNA 5-methylcytosine modifications: Detection, effectors, biological functions, and clinical relevance

G Guo, K Pan, S Fang, L Ye, X Tong, Z Wang… - … Therapy-Nucleic Acids, 2021 - cell.com
5-methylcytosine (m 5 C) post-transcriptional modifications affect the maturation, stability,
and translation of the mRNA molecule. These modifications play an important role in many …

Analysis of RNA modifications by second-and third-generation deep sequencing: 2020 update

Y Motorin, V Marchand - Genes, 2021 - mdpi.com
The precise mapping and quantification of the numerous RNA modifications that are present
in tRNAs, rRNAs, ncRNAs/miRNAs, and mRNAs remain a major challenge and a top priority …

Single-electron transfer between sulfonium and tryptophan enables site-selective photo crosslinking of methyllysine reader proteins

F Feng, Y Gao, Q Zhao, T Luo, Q Yang, N Zhao… - Nature Chemistry, 2024 - nature.com
The identification of readers, an important class of proteins that recognize modified residues
at specific sites, is essential to uncover the biological roles of post-translational …

C2-methyladenosine in tRNA promotes protein translation by facilitating the decoding of tandem m2A-tRNA-dependent codons

HC Duan, C Zhang, P Song, J Yang, Y Wang… - Nature …, 2024 - nature.com
RNA modification C 2-methyladenosine (m2A) exists in both rRNA and tRNA of Escherichia
coli (E. coli), installed by the methyltransferase RlmN using a radical-S-adenosylmethionine …

MePMe-seq: antibody-free simultaneous m6A and m5C mapping in mRNA by metabolic propargyl labeling and sequencing

K Hartstock, NA Kueck, P Spacek… - Nature …, 2023 - nature.com
Internal modifications of mRNA have emerged as widespread and versatile regulatory
mechanism to control gene expression at the post-transcriptional level. Most of these …

FICC-Seq: a method for enzyme-specified profiling of methyl-5-uridine in cellular RNA

JM Carter, W Emmett, IR Mozos, A Kotter… - Nucleic acids …, 2019 - academic.oup.com
Abstract Methyl-5-uridine (m5U) is one the most abundant non-canonical bases present in
cellular RNA, and in yeast is found at position U54 of tRNAs where modification is catalysed …

An RNA modification enzyme directly senses reactive oxygen species for translational regulation in Enterococcus faecalis

WL Lee, A Sinha, LN Lam, HL Loo, J Liang… - Nature …, 2023 - nature.com
Bacteria possess elaborate systems to manage reactive oxygen and nitrogen species (ROS)
arising from exposure to the mammalian immune system and environmental stresses. Here …

The potential of RNA methylation in the treatment of cardiovascular diseases

K Wang, YQ Wang, YH Li, B Fang, B Li, W Cheng… - Iscience, 2024 - cell.com
RNA methylation has emerged as a dynamic regulatory mechanism that impacts gene
expression and protein synthesis. Among the known RNA methylation modifications, N6 …

miCLIP-MaPseq identifies substrates of radical SAM RNA-methylating enzyme using mechanistic cross-linking and mismatch profiling

V Stojković, DE Weinberg, DG Fujimori - RNA Modifications: Methods and …, 2021 - Springer
The family of radical SAM RNA-methylating enzymes comprises a large group of proteins
that contains only a few functionally characterized members. Several enzymes in this family …

RNA nucleoprotein complexes in biological systems

P Mishra, SHH Sankar, N Gosavi… - Proceedings of the Indian …, 2022 - Springer
RNA-nucleoprotein (RNP) complexes are pivotal to the regulation of gene expression.
These multiprotein, multifunctional complexes act as scaffolds, as molecular platforms, as …