[HTML][HTML] An overview of bioinformatics tools for epitope prediction: implications on vaccine development

RE Soria-Guerra, R Nieto-Gomez… - Journal of biomedical …, 2015 - Elsevier
Exploitation of recombinant DNA and sequencing technologies has led to a new concept in
vaccination in which isolated epitopes, capable of stimulating a specific immune response …

Reverse vaccinology: developing vaccines in the era of genomics

A Sette, R Rappuoli - Immunity, 2010 - cell.com
The sequence of microbial genomes made all potential antigens of each pathogen available
for vaccine development. This increased by orders of magnitude potential vaccine targets in …

Identification of vaccine targets in pathogens and design of a vaccine using computational approaches

K Rawal, R Sinha, BA Abbasi, A Chaudhary, SK Nath… - Scientific reports, 2021 - nature.com
Antigen identification is an important step in the vaccine development process.
Computational approaches including deep learning systems can play an important role in …

Designing of multi-epitope peptide vaccine against Acinetobacter baumannii through combined immunoinformatics and protein interaction–based approaches

J Dey, SR Mahapatra, PK Singh… - Immunologic …, 2023 - Springer
Acinetobacter baumannii is one of the major pathogenic ESKAPE bacterium, which is
responsible for about more than 722,000 cases in a year, globally. Despite the alarming …

Immunoinformatics-guided designing of epitope-based subunit vaccine from Pilus assembly protein of Acinetobacter baumannii bacteria

SR Mahapatra, J Dey, A Jaiswal, R Roy, N Misra… - Journal of …, 2022 - Elsevier
Acinetobacter baumannii, a prominent pathogen responsible for chronic infections in the
blood, urinary tract, and lungs, has a high mortality due to its virulence and limited …

Designing an efficient multi-epitope peptide vaccine against Vibrio cholerae via combined immunoinformatics and protein interaction based approaches

N Nezafat, Z Karimi, M Eslami, M Mohkam… - … biology and chemistry, 2016 - Elsevier
Cholera continues to be a major global health concern. Among different Vibrio cholerae
strains, only O1 and O139 cause acute diarrheal diseases that are related to epidemic and …

Designing a multi-epitope vaccine to provoke the robust immune response against influenza A H7N9

H Tarrahimofrad, S Rahimnahal, J Zamani… - Scientific Reports, 2021 - nature.com
A new strain of Influenza A Virus (IAV), so-called" H7N9 Avian Influenza", is the first strain of
this virus in which a human is infected by transmitting the N9 of influenza virus. Although …

Emerging vaccine informatics

Y He, R Rappuoli, AS De Groot… - BioMed Research …, 2010 - Wiley Online Library
Vaccine informatics is an emerging research area that focuses on development and
applications of bioinformatics methods that can be used to facilitate every aspect of the …

The key role of genomics in modern vaccine and drug design for emerging infectious diseases

KL Seib, G Dougan, R Rappuoli - PLoS genetics, 2009 - journals.plos.org
It can be argued that the arrival of the “genomics era” has significantly shifted the paradigm
of vaccine and therapeutics development from microbiological to sequence-based …

In silico designing and immunoinformatics analysis of a novel peptide vaccine against metallo-beta-lactamase (VIM and IMP) variants

H Motamedi, A Alvandi, M Fathollahi, MM Ari… - PLoS …, 2023 - journals.plos.org
The rapid spread of acquired metallo-beta-lactamases (MBLs) among gram negative
pathogens is becoming a global concern. Improper use of broad-spectrum antibiotics can …