[HTML][HTML] Extrachromosomal circular DNA: a neglected nucleic acid molecule in plants

H Peng, M Mirouze, E Bucher - Current Opinion in Plant Biology, 2022 - Elsevier
Throughout the years, most plant genomic studies were focused on nuclear chromosomes.
Extrachromosomal circular DNA (eccDNA) has largely been neglected for decades since its …

Master graph: an essential integrated assembly model for the plant mitogenome based on a graph-based framework

W He, K Xiang, C Chen, J Wang… - Briefings in …, 2023 - academic.oup.com
Unlike the typical single circular structure of most animal mitochondrial genomes
(mitogenome), the drastic structural variation of plant mitogenomes is a result of a mixture of …

Sorting of mitochondrial and plastid heteroplasmy in Arabidopsis is extremely rapid and depends on MSH1 activity

AK Broz, A Keene… - Proceedings of the …, 2022 - National Acad Sciences
The fate of new mitochondrial and plastid mutations depends on their ability to persist and
spread among the numerous organellar genome copies within a cell (heteroplasmy). The …

A gap-free genome assembly of Chlamydomonas reinhardtii and detection of translocations induced by CRISPR-mediated mutagenesis

ZL Payne, GM Penny, TN Turner, SK Dutcher - Plant Communications, 2023 - cell.com
Genomic assemblies of the unicellular green alga Chlamydomonas reinhardtii have
provided important resources for researchers. However, assembly errors, large gaps, and …

The extent and characteristics of DNA transfer between plasmids and chromosomes

AS Kadibalban, G Landan, T Dagan - Current Biology, 2024 - cell.com
Plasmids are extrachromosomal genetic elements that reside in prokaryotes. The acquisition
of plasmids encoding beneficial traits can facilitate short-term survival in harsh …

Long-read RNA sequencing can probe organelle genome pervasive transcription

M Sanita Lima, D Silva Domingues… - Briefings in …, 2024 - academic.oup.com
Abstract 40 years ago, organelle genomes were assumed to be streamlined and, perhaps,
unexciting remnants of their prokaryotic past. However, the field of organelle genomics has …

Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

JB Fernandes, M Naish, Q Lian, R Burns, AJ Tock… - Genome Biology, 2024 - Springer
Background Centromeres load kinetochore complexes onto chromosomes, which mediate
spindle attachment and allow segregation during cell division. Although centromeres …

Mitochondrial gene defects in Arabidopsis can broadly affect mitochondrial gene expression through copy number

H Ayabe, A Toyoda, A Iwamoto, N Tsutsumi… - Plant …, 2023 - academic.oup.com
How mitochondria regulate the expression of their genes is poorly understood, partly
because methods have not been developed for stably transforming mitochondrial genomes …

The mitochondrial genome of the diploid oat Avena longiglumis

Q Liu, H Yuan, J Xu, D Cui, G Xiong, T Schwarzacher… - BMC Plant …, 2023 - Springer
Abstract Background Avena longiglumis Durieu (2 n= 2 x= 14) is a wild relative of cultivated
oat (Avena sativa, 2 n= 6 x= 42) with good agronomic and nutritional traits. The plant …

Chromosome-Level Genome Assembly for the Angiosperm Silene conica

PD Fields, MM Weber, G Waneka… - Genome Biology and …, 2023 - academic.oup.com
The angiosperm genus Silene has been the subject of extensive study in the field of ecology
and evolution, but the availability of high-quality reference genome sequences has been …