[HTML][HTML] Using a suite of ontologies for preserving workflow-centric research objects

K Belhajjame, J Zhao, D Garijo, M Gamble… - Journal of Web …, 2015 - Elsevier
Scientific workflows are a popular mechanism for specifying and automating data-driven in
silico experiments. A significant aspect of their value lies in their potential to be reused. Once …

Exploring the role of machine learning in scientific workflows: Opportunities and challenges

A Nouri, PE Davis, P Subedi, M Parashar - arXiv preprint arXiv …, 2021 - arxiv.org
In this survey, we discuss the challenges of executing scientific workflows as well as existing
Machine Learning (ML) techniques to alleviate those challenges. We provide the context …

Recording provenance of workflow runs with RO-Crate

S Leo, MR Crusoe, L Rodríguez-Navas, R Sirvent… - PLoS one, 2024 - journals.plos.org
Recording the provenance of scientific computation results is key to the support of
traceability, reproducibility and quality assessment of data products. Several data models …

Common motifs in scientific workflows: An empirical analysis

D Garijo, P Alper, K Belhajjame, O Corcho, Y Gil… - Future generation …, 2014 - Elsevier
Workflow technology continues to play an important role as a means for specifying and
enacting computational experiments in modern science. Reusing and re-purposing …

Workflow-centric research objects: First class citizens in scholarly discourse.

A workflow-centric research object bundles a workflow, the provenance of the results
obtained by its enactment, other digital objects that are relevant for the experiment (papers …

Quantifying reproducibility in computational biology: the case of the tuberculosis drugome

D Garijo, S Kinnings, L Xie, L Xie, Y Zhang, PE Bourne… - PloS one, 2013 - journals.plos.org
How easy is it to reproduce the results found in a typical computational biology paper?
Either through experience or intuition the reader will already know that the answer is with …

Augmenting prov with plans in p-plan: scientific processes as linked data

D Garijo Verdejo, Y Gil - 2012 - oa.upm.es
Provenance models are crucial for describing experimental results in science. The W3C
Provenance Working Group has recently released the PROV family of specifications for …

Towards intelligent giservices

P Yue, P Baumann, K Bugbee, L Jiang - Earth Science Informatics, 2015 - Springer
Distributed information infrastructures are increasingly used in the geospatial domain. In the
infrastructures, data are being collected by distributed sensor services, served by distributed …

{D-PROV}: Extending the {PROV} Provenance Model with {Workflow} Structure

P Missier, S Dey, K Belhajjame… - 5th USENIX Workshop …, 2013 - usenix.org
This paper presents an extension to the W3C PROV provenance model, aimed at
representing process structure. Although the modelling of process structure is out of the …

Ontology-based big data management

B Eine, M Jurisch, W Quint - Systems, 2017 - mdpi.com
Big data management is no longer an issue for large enterprises only; it has also become a
challenge for small and middle-sized enterprises, too. Today, enterprises have to handle …