In recent years, the advent of new experimental methodologies for studying the high complexity of the human genome and proteome has led to the generation of an increasing …
Structural biology aims at characterizing the structural and dynamic properties of biological macromolecules at atomic details. Gaining insight into three dimensional structures of …
G Li, SK Panday, E Alexov - International journal of molecular sciences, 2021 - mdpi.com
Modeling the effect of mutations on protein thermodynamics stability is useful for protein engineering and understanding molecular mechanisms of disease-causing variants. Here …
JW Lee, MA Maria-Solano, TNL Vu… - Biochemical Society …, 2022 - portlandpress.com
There have been numerous advances in the development of computational and statistical methods and applications of big data and artificial intelligence (AI) techniques for computer …
R Bonetta, G Valentino - Proteins: Structure, Function, and …, 2020 - Wiley Online Library
Proteins play important roles in living organisms, and their function is directly linked with their structure. Due to the growing gap between the number of proteins being discovered …
H Wang, C Liu, L Deng - Scientific reports, 2018 - nature.com
Identification of hot spots, a small portion of protein-protein interface residues that contribute the majority of the binding free energy, can provide crucial information for understanding the …
Hot spots are the subset of interface residues that account for most of the binding free energy, and they play essential roles in the stability of protein binding. Effectively identifying …
C Geng, A Vangone, GE Folkers… - Proteins: Structure …, 2019 - Wiley Online Library
Quantitative evaluation of binding affinity changes upon mutations is crucial for protein engineering and drug design. Machine learning‐based methods are gaining increasing …
Experimental detection of residues critical for protein-protein interactions (PPI) is a timeconsuming, costly, and labor-intensive process. Hence, high-throughput PPI-hot spot …