Microorganisms including bacteria, fungi, viruses, protists and archaea live as communities
in complex and contiguous environments. They engage in numerous inter-and intra …

Integrated network analysis pipeline (iNAP) is an online analysis pipeline for generating and
analyzing comprehensive ecological networks in microbiome studies. It is implemented in …

Local associations refer to spatial–temporal correlations that emerge from the biological
realm, such as time-dependent gene co-expression or seasonal interactions between …

Background Ecological interactions among microorganisms are fundamental for ecosystem
function, yet they are mostly unknown or poorly understood. High-throughput-omics can …

Competing endogenous RNAs (ceRNAs) regulate each other by competitively binding
microRNAs they share. This is a vital post-transcriptional regulation mechanism and plays …

Amplicon sequencing data and operating data from anaerobic wastewater treatment plants
from three Canadian pulp and paper mills were explored using correlation and network …

Ecological network analyses are used to identify potential biotic interactions between
microorganisms from species abundance data. These analyses are often carried out using …

Microbial taxon–taxon co‐occurrences may directly or indirectly reflect the potential
relationships between the members within a microbial community. However, to what extent …

Interactions between biological molecules in a cell are tightly coordinated and often highly
dynamic. As a result of these varying signaling activities, changes in gene coexpression …

Background: Nutrients are one of the key determinants of gut microbiota variation. However,
the intricate associations between the amino acid (AA) profile and the dynamic fluctuations …