Alternative polyadenylation: new insights from global analyses

Y Shi - Rna, 2012 - rnajournal.cshlp.org
Recent studies have revealed widespread mRNA alternative polyadenylation (APA) in
eukaryotes and its dynamic spatial and temporal regulation. APA not only generates …

Pre‐mRNA 3′‐end processing complex assembly and function

S Chan, EA Choi, Y Shi - Wiley Interdisciplinary Reviews: RNA, 2011 - Wiley Online Library
The 3′‐ends of almost all eukaryotic mRNAs are formed in a two‐step process, an
endonucleolytic cleavage followed by polyadenylation (the addition of a poly‐adenosine or …

[HTML][HTML] Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to …

G Janbon, KL Ormerod, D Paulet, EJ Byrnes III… - PLoS …, 2014 - journals.plos.org
Cryptococcus neoformans is a pathogenic basidiomycetous yeast responsible for more than
600,000 deaths each year. It occurs as two serotypes (A and D) representing two varieties …

A large-scale analysis of mRNA polyadenylation of human and mouse genes

B Tian, J Hu, H Zhang, CS Lutz - Nucleic acids research, 2005 - academic.oup.com
Abstract mRNA polyadenylation is a critical cellular process in eukaryotes. It involves 3′
end cleavage of nascent mRNAs and addition of the poly (A) tail, which plays important roles …

Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq

PJ Shepard, EA Choi, J Lu, LA Flanagan, KJ Hertel… - Rna, 2011 - rnajournal.cshlp.org
Alternative polyadenylation (APA) of mRNAs has emerged as an important mechanism for
post-transcriptional gene regulation in higher eukaryotes. Although microarrays have …

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

PAC 't Hoen, Y Ariyurek, HH Thygesen… - Nucleic acids …, 2008 - academic.oup.com
The hippocampal expression profiles of wild-type mice and mice transgenic for δC-
doublecortin-like kinase were compared with Solexa/Illumina deep sequencing technology …

[HTML][HTML] The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution

NG Kolev, JB Franklin, S Carmi, H Shi… - PLoS …, 2010 - journals.plos.org
The genome of Trypanosoma brucei, the causative agent of African trypanosomiasis, was
published five years ago, yet identification of all genes and their transcripts remains to be …

[图书][B] Handbook of computational molecular biology

S Aluru - 2005 - taylorfrancis.com
The enormous complexity of biological systems at the molecular level must be answered
with powerful computational methods. Computational biology is a young field, but has seen …

Poly (A) binding protein nuclear 1 levels affect alternative polyadenylation

E de Klerk, A Venema, SY Anvar… - Nucleic acids …, 2012 - academic.oup.com
The choice for a polyadenylation site determines the length of the 3′-untranslated region
(3′-UTRs) of an mRNA. Inclusion or exclusion of regulatory sequences in the 3′-UTR may …

[HTML][HTML] High-resolution RNA maps suggest common principles of splicing and polyadenylation regulation by TDP-43

G Rot, Z Wang, I Huppertz, M Modic, T Lenče… - Cell reports, 2017 - cell.com
Many RNA-binding proteins (RBPs) regulate both alternative exons and poly (A) site
selection. To understand their regulatory principles, we developed expressRNA, a web …