Synthetic lethality and cancer

NJ O'Neil, ML Bailey, P Hieter - Nature Reviews Genetics, 2017 - nature.com
A synthetic lethal interaction occurs between two genes when the perturbation of either gene
alone is viable but the perturbation of both genes simultaneously results in the loss of …

Am I ready for CRISPR? A user's guide to genetic screens

JG Doench - Nature Reviews Genetics, 2018 - nature.com
Exciting new technologies are often self-limiting in their rollout, as access to state-of-the-art
instrumentation or the need for years of hands-on experience, for better or worse, ensures …

Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening

J Joung, S Konermann, JS Gootenberg… - Nature protocols, 2017 - nature.com
Forward genetic screens are powerful tools for the unbiased discovery and functional
characterization of specific genetic elements associated with a phenotype of interest …

High-throughput functional genomics using CRISPR–Cas9

O Shalem, NE Sanjana, F Zhang - Nature Reviews Genetics, 2015 - nature.com
Forward genetic screens are powerful tools for the discovery and functional annotation of
genetic elements. Recently, the RNA-guided CRISPR (clustered regularly interspaced short …

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex

S Konermann, MD Brigham, AE Trevino, J Joung… - Nature, 2015 - nature.com
Systematic interrogation of gene function requires the ability to perturb gene expression in a
robust and generalizable manner. Here we describe structure-guided engineering of a …

Sequence determinants of improved CRISPR sgRNA design

H Xu, T Xiao, CH Chen, W Li, CA Meyer, Q Wu… - Genome …, 2015 - genome.cshlp.org
The CRISPR/Cas9 system has revolutionized mammalian somatic cell genetics. Genome-
wide functional screens using CRISPR/Cas9-mediated knockout or dCas9 fusion-mediated …

Genome-scale CRISPR-Cas9 knockout screening in human cells

O Shalem, NE Sanjana, E Hartenian, X Shi, DA Scott… - Science, 2014 - science.org
The simplicity of programming the CRISPR (clustered regularly interspaced short
palindromic repeats)–associated nuclease Cas9 to modify specific genomic loci suggests a …

Defining functional DNA elements in the human genome

M Kellis, B Wold, MP Snyder… - Proceedings of the …, 2014 - National Acad Sciences
With the completion of the human genome sequence, attention turned to identifying and
annotating its functional DNA elements. As a complement to genetic and comparative …

The molecular biology of head and neck cancer

CR Leemans, BJM Braakhuis, RH Brakenhoff - Nature reviews cancer, 2011 - nature.com
Head and neck squamous cell carcinomas (HNSCCs) are caused by tobacco and alcohol
consumption and by infection with high-risk types of human papillomavirus (HPV). Tumours …

Quantitative evolutionary dynamics using high-resolution lineage tracking

SF Levy, JR Blundell, S Venkataram, DA Petrov… - Nature, 2015 - nature.com
Evolution of large asexual cell populations underlies∼ 30% of deaths worldwide, including
those caused by bacteria, fungi, parasites, and cancer. However, the dynamics underlying …