Genetic diversity and evolution of hepatitis C virus–15 years on

P Simmonds - Journal of General Virology, 2004 - microbiologyresearch.org
In the 15 years since the discovery of hepatitis C virus (HCV), much has been learned about
its role as a major causative agent of human liver disease and its ability to persist in the face …

Cis-acting RNA elements in human and animal plus-strand RNA viruses

Y Liu, E Wimmer, AV Paul - Biochimica et Biophysica Acta (BBA)-Gene …, 2009 - Elsevier
The RNA genomes of plus-strand RNA viruses have the ability to form secondary and higher-
order structures that contribute to their stability and to their participation in inter-and …

The global and local distribution of RNA structure throughout the SARS-CoV-2 genome

RCA Tavares, G Mahadeshwar, H Wan… - Journal of …, 2021 - Am Soc Microbiol
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causative agent of
COVID-19, the disease at the center of the current global pandemic. While knowledge of …

[HTML][HTML] The coding region of the HCV genome contains a network of regulatory RNA structures

N Pirakitikulr, A Kohlway, BD Lindenbach, AM Pyle - Molecular cell, 2016 - cell.com
RNA is a versatile macromolecule that accommodates functional information in primary
sequence and secondary and tertiary structure. We use a combination of chemical probing …

Functionally conserved architecture of hepatitis C virus RNA genomes

DM Mauger, M Golden, D Yamane… - Proceedings of the …, 2015 - National Acad Sciences
Hepatitis C virus (HCV) infects over 170 million people worldwide and is a leading cause of
liver disease and cancer. The virus has a 9,650-nt, single-stranded, messenger-sense RNA …

RNase L releases a small RNA from HCV RNA that refolds into a potent PAMP

K Malathi, T Saito, N Crochet, DJ Barton, M Gale… - Rna, 2010 - rnajournal.cshlp.org
Triggering and propagating an intracellular innate immune response is essential for control
of viral infections. RNase L is a host endoribonuclease and a pivotal component of innate …

Cellular and molecular biology of HCV infection and hepatitis

H Tang, H Grisé - Clinical science, 2009 - portlandpress.com
HCV (hepatitis C virus) infects nearly 3% of the population worldwide and has emerged as a
major causative agent of liver disease, resulting in acute and chronic infections that can lead …

Pervasive RNA secondary structure in the genomes of SARS-CoV-2 and other coronaviruses

P Simmonds - MBio, 2020 - Am Soc Microbiol
The ultimate outcome of the coronavirus disease 2019 (COVID-19) pandemic is unknown
and is dependent on a complex interplay of its pathogenicity, transmissibility, and population …

Studying hepatitis C virus: making the best of a bad virus

TL Tellinghuisen, MJ Evans, T von Hahn, S You… - Journal of …, 2007 - Am Soc Microbiol
An estimated 3% of the world population is infected with hepatitis C virus (HCV)(5, 232). In
most infected individuals, this remarkable RNA virus evades the immune system and …

Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses

P Simmonds, I Karakasiliotis, D Bailey… - Nucleic acids …, 2008 - academic.oup.com
The mechanism and role of RNA structure elements in the replication and translation of
Caliciviridae remains poorly understood. Several algorithmically independent methods were …