Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

Complex cocktails: the evolutionary novelty of venoms

NR Casewell, W Wüster, FJ Vonk, RA Harrison… - Trends in ecology & …, 2013 - cell.com
Venoms have evolved on numerous occasions throughout the animal kingdom. These
'biochemical weapon systems' typically function to facilitate, or protect the producing animal …

Towards complete and error-free genome assemblies of all vertebrate species

A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti… - Nature, 2021 - nature.com
High-quality and complete reference genome assemblies are fundamental for the
application of genomics to biology, disease, and biodiversity conservation. However, such …

The Ensembl gene annotation system

BL Aken, S Ayling, D Barrell, L Clarke, V Curwen… - Database, 2016 - academic.oup.com
The Ensembl gene annotation system has been used to annotate over 70 different
vertebrate species across a wide range of genome projects. Furthermore, it generates the …

The tuatara genome reveals ancient features of amniote evolution

NJ Gemmell, K Rutherford, S Prost, M Tollis, D Winter… - Nature, 2020 - nature.com
The tuatara (Sphenodon punctatus)—the only living member of the reptilian order
Rhynchocephalia (Sphenodontia), once widespread across Gondwana,—is an iconic …

The UCSC genome browser database: 2017 update

C Tyner, GP Barber, J Casper, H Clawson… - Nucleic acids …, 2017 - academic.oup.com
Since its 2001 debut, the University of California, Santa Cruz (UCSC) Genome Browser
(http://genome. ucsc. edu/) team has provided continuous support to the international …

[HTML][HTML] Platypus and echidna genomes reveal mammalian biology and evolution

Y Zhou, L Shearwin-Whyatt, J Li, Z Song, T Hayakawa… - Nature, 2021 - nature.com
Egg-laying mammals (monotremes) are the only extant mammalian outgroup to therians
(marsupial and eutherian animals) and provide key insights into mammalian evolution 1, 2 …

Comparative genomics reveals insights into avian genome evolution and adaptation

G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz… - Science, 2014 - science.org
Birds are the most species-rich class of tetrapod vertebrates and have wide relevance
across many research fields. We explored bird macroevolution using full genomes from 48 …

[HTML][HTML] Global distribution and conservation of evolutionary distinctness in birds

W Jetz, GH Thomas, JB Joy, DW Redding, K Hartmann… - Current biology, 2014 - cell.com
Background Integrated, efficient, and global prioritization approaches are necessary to
manage the ongoing loss of species and their associated function." Evolutionary …

Mammalian transposable elements and their impacts on genome evolution

RN Platt, MW Vandewege, DA Ray - Chromosome Research, 2018 - Springer
Transposable elements (TEs) are genetic elements with the ability to mobilize and replicate
themselves in a genome. Mammalian genomes are dominated by TEs, which can reach …