Carbon monoxide signaling: examining its engagement with various molecular targets in the context of binding affinity, concentration, and biologic response

Z Yuan, LK De La Cruz, X Yang, B Wang, Q Ma - Pharmacological Reviews, 2022 - Elsevier
Carbon monoxide (CO) has been firmly established as an endogenous signaling molecule
with a variety of pathophysiological and pharmacological functions, including …

Time-resolved X-ray scattering studies of proteins

HS Cho, F Schotte, V Stadnytskyi, P Anfinrud - Current opinion in structural …, 2021 - Elsevier
Time-resolved small-and wide-angle X-ray scattering studies of proteins in solution based
on the pump-probe approach unveil structural information from intermediates over a broad …

Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme

MC Thompson, BA Barad, AM Wolff, H Sun Cho… - Nature …, 2019 - nature.com
Correlated motions of proteins are critical to function, but these features are difficult to
resolve using traditional structure determination techniques. Time-resolved X-ray methods …

Tracking the structural dynamics of proteins with time-resolved X-ray solution scattering

K Pounot, G Schirò, M Levantino - Current Opinion in Structural Biology, 2023 - Elsevier
Relevant events during protein function such as ligand binding/release and interaction with
substrates or with light are often accompanied by out-of-equilibrium structural dynamics …

BioCARS: Synchrotron facility for probing structural dynamics of biological macromolecules

RW Henning, I Kosheleva, V Šrajer, IS Kim… - Structural …, 2024 - pubs.aip.org
ABSTRACT A major goal in biomedical science is to move beyond static images of proteins
and other biological macromolecules to the internal dynamics underlying their function. This …

Allosteric transitions in hemoglobin revisited

N Shibayama - Biochimica et Biophysica Acta (BBA)-General Subjects, 2020 - Elsevier
Background Human hemoglobin is an allosteric protein that exerts exquisite control over
ligand binding through large-scale conformational changes. The two-state model without …

Unfolding bovine α-lactalbumin with T-jump: Characterizing disordered intermediates via time-resolved x-ray solution scattering and molecular dynamics simulations

DJ Hsu, D Leshchev, I Kosheleva… - The Journal of …, 2021 - pubs.aip.org
The protein folding process often proceeds through partially folded transient states.
Therefore, a structural understanding of these disordered states is crucial for developing …

Structural dynamics of proteins explored via time-resolved x-ray liquidography

Y Lee, H Lee, H Ihee - Chemical Physics Reviews, 2022 - pubs.aip.org
The structure of a protein is closely related to its biological function. In this regard, structural
changes, as well as static structures, have been scrutinized as essential elements in …

Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography

AM Wolff, E Nango, ID Young, AS Brewster, M Kubo… - Nature …, 2023 - nature.com
Understanding and controlling protein motion at atomic resolution is a hallmark challenge
for structural biologists and protein engineers because conformational dynamics are …

[HTML][HTML] Integrating solvation shell structure in experimentally driven molecular dynamics using x-ray solution scattering data

DJ Hsu, D Leshchev, I Kosheleva… - The Journal of …, 2020 - pubs.aip.org
In the past few decades, prediction of macromolecular structures beyond the native
conformation has been aided by the development of molecular dynamics (MD) protocols …