Single-nucleotide variants in human RNA: RNA editing and beyond

Y Guo, H Yu, DC Samuels, W Yue… - Briefings in …, 2019 - academic.oup.com
Through analysis of paired high-throughput DNA-Seq and RNA-Seq data, researchers
quickly recognized that RNA-Seq can be used for more than just gene expression …

The mutational landscape of the SCAN‐B real‐world primary breast cancer transcriptome

C Brueffer, S Gladchuk, C Winter… - EMBO molecular …, 2020 - embopress.org
Breast cancer is a disease of genomic alterations, of which the panorama of somatic
mutations and how these relate to subtypes and therapy response is incompletely …

Features of increased malignancy in eosinophilic clear cell renal cell carcinoma

H Nilsson, D Lindgren, H Axelson… - The Journal of …, 2020 - Wiley Online Library
Clear cell renal cell carcinoma (ccRCC) is the most common form of renal cancer. Due to
inactivation of the von Hippel–Lindau tumour suppressor, the hypoxia‐inducible …

RDDSVM: accurate prediction of A-to-I RNA editing sites from sequence using support vector machines

HA Tac, M Koroglu, U Sezerman - Functional & Integrative Genomics, 2021 - Springer
Adenosine to inosine (A-to-I) editing in RNA is involved in various biological processes like
gene expression, alternative splicing, and mRNA degradation associated with …

EPAI-NC: Enhanced prediction of adenosine to inosine RNA editing sites using nucleotide compositions

A Ahmad, S Shatabda - Analytical biochemistry, 2019 - Elsevier
RNA editing process like Adenosine to Intosine (A-to-I) often influences basic functions like
splicing stability and most importantly the translation. Thus knowledge about editing sites is …

Breast cancer biomarkers with clinical relevance identified by massively-parallel DNA and RNA sequencing

M Dahlgren - 2021 - portal.research.lu.se
Women have a 10% lifetime risk of developing breast cancer, and the disease has
surpassed lung cancer as the most frequently diagnosed type of cancer in the world. Breast …

iPReditor-CMG: Improving a predictive RNA editor for crop mitochondrial genomes using genomic sequence features and an optimal support vector machine

S Qin, Y Fan, S Hu, Y Wang, Z Wang, Y Cao, Q Liu… - Phytochemistry, 2022 - Elsevier
In crops, RNA editing is one of the most important post-transcriptional processes in which
specific cytidines (C) in virtually all mitochondrial protein-coding genes are converted to …

基于机器学习的RNA 编辑位点预测方法综述.

冷嘉承, 吴凌云 - Chinese Journal of Bioinformatics, 2019 - search.ebscohost.com
RNA 编辑是一个十分重要的生物细胞分子机制. 作为转录后修饰的一步, 它可以增加蛋白质组学
多样性, 改变转录产物的稳定性, 调节基因表达等. RNA 编辑失调会导致各种疾病 …

The predictive value of double-stranded RNA for A-to-I editing detection

G Shur, Y Tamir, A Eran - bioRxiv, 2022 - biorxiv.org
Structured Abstract Motivation Adenosine-to-inosine (A-to-I) RNA editing, a crucial reaction
for many processes that contribute to transcriptome plasticity, is both widely common across …

[PDF][PDF] Enhanced prediction of A-to-I RNA editing sites using nucleotide compositions

A Ahmad - 2019 - dspace.uiu.ac.bd
RNA editing process like Adenosine to Intosine (A-to-I) often influences basic functions like
splicing stability and most importantly the translation. Thus knowledge about editing sites is …