A molecular view of DNA flexibility

A Marin-Gonzalez, JG Vilhena, R Perez… - Quarterly Reviews of …, 2021 - cambridge.org
DNA dynamics can only be understood by taking into account its complex mechanical
behavior at different length scales. At the micrometer level, the mechanical properties of …

DNA in nanochannels: theory and applications

K Frykholm, V Müller, KK Sriram… - Quarterly Reviews of …, 2022 - cambridge.org
Nanofluidic structures have over the last two decades emerged as a powerful platform for
detailed analysis of DNA on the kilobase pair length scale. When DNA is confined to a …

Single-molecule AFM study of hyaluronic acid softening in electrolyte solutions

EV Dubrovin, NA Barinov, DA Ivanov, DV Klinov - Carbohydrate Polymers, 2023 - Elsevier
Investigation of hyaluronic acid (HA) morphology and mechanical properties at a single-
molecule level is important for the development of HA based biomaterials. We have …

Deciphering the mechanical properties of B‐DNA duplex

H Dohnalová, F Lankaš - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
Abstract Structure and deformability of the DNA double helix play a key role in protein and
small ligand binding, in genome regulation via looping, or in nanotechnology applications …

Effect of the protonation level and ionic strength on the structure of linear polyethyleneimine

CE Gallops, C Yu, JD Ziebarth, Y Wang - Acs Omega, 2019 - ACS Publications
Polyethylenimine (PEI) is a highly studied vector for nonviral gene delivery, with a high
transfection efficiency that has been linked with its pH responsiveness. Atomistic molecular …

Opposite effects of high-valent cations on the elasticities of DNA and RNA duplexes revealed by magnetic tweezers

H Fu, C Zhang, XW Qiang, YJ Yang, L Dai, ZJ Tan… - Physical Review Letters, 2020 - APS
We report that trivalent cobalt hexammine cations decrease the persistence length,
stretching modulus, helical density, and size of plectonemes formed under torque of DNA …

Systematic Comparison of Atomistic Force Fields for the Mechanical Properties of Double-Stranded DNA

C Roldán-Piñero, J Luengo-Márquez… - Journal of Chemical …, 2024 - ACS Publications
The response of double-stranded DNA to external mechanical stress plays a central role in
its interactions with the protein machinery in the cell. Modern atomistic force fields have …

What do we know about DNA mechanics so far?

A Aggarwal, S Naskar, AK Sahoo… - Current opinion in …, 2020 - Elsevier
Highlights•DNA molecules are often bent, twisted, and stretched.•DNA mechanics has been
studied using many theoretical models.•DNA mechanics crucially depends on physiological …

Unusual similarity of DNA solvation dynamics in high-salinity crowding with divalent cations of varying concentrations

D Sardana, P Alam, K Yadav, NS Clovis… - Physical Chemistry …, 2023 - pubs.rsc.org
Double-stranded DNA bears the highest linear negative charge density (2e− per base-pair)
among all biopolymers, leading to strong interactions with cations and dipolar water …

Mechanical flexibility of DNA: a quintessential tool for DNA nanotechnology

R Saran, Y Wang, ITS Li - Sensors, 2020 - mdpi.com
The mechanical properties of DNA have enabled it to be a structural and sensory element in
many nanotechnology applications. While specific base-pairing interactions and secondary …