Principles for integrative structural biology studies

MP Rout, A Sali - Cell, 2019 - cell.com
Integrative structure determination is a powerful approach to modeling the structures of
biological systems based on data produced by multiple experimental and theoretical …

Artificial intelligence in cryo-electron microscopy

JM Chung, CL Durie, J Lee - Life, 2022 - mdpi.com
Cryo-electron microscopy (cryo-EM) has become an unrivaled tool for determining the
structure of macromolecular complexes. The biological function of macromolecular …

Protein structure modeling with MODELLER

B Webb, A Sali - Functional genomics: Methods and protocols, 2017 - Springer
Genome sequencing projects have resulted in a rapid increase in the number of known
protein sequences. In contrast, only about one-hundredth of these sequences have been …

Model building of protein complexes from intermediate-resolution cryo-EM maps with deep learning-guided automatic assembly

J He, P Lin, J Chen, H Cao, SY Huang - Nature Communications, 2022 - nature.com
Advances in microscopy instruments and image processing algorithms have led to an
increasing number of cryo-electron microscopy (cryo-EM) maps. However, building accurate …

Comparative protein structure modeling using MODELLER

B Webb, A Sali - Current protocols in bioinformatics, 2016 - Wiley Online Library
Comparative protein structure modeling predicts the three‐dimensional structure of a given
protein sequence (target) based primarily on its alignment to one or more proteins of known …

UCSF Chimera, MODELLER, and IMP: an integrated modeling system

Z Yang, K Lasker, D Schneidman-Duhovny… - Journal of structural …, 2012 - Elsevier
Structural modeling of macromolecular complexes greatly benefits from interactive
visualization capabilities. Here we present the integration of several modeling tools into …

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

D Russel, K Lasker, B Webb, J Velázquez-Muriel… - PLoS …, 2012 - journals.plos.org
A set of software tools for building and distributing models of macromolecular assemblies
uses an integrative structure modeling approach, which casts the building of models as a …

[图书][B] Protein structure modeling with MODELLER

B Webb, A Sali - 2021 - Springer
Genome sequencing projects have resulted in a rapid increase in the number of known
protein sequences. In contrast, only about one-hundredth of these sequences have been …

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

K Lasker, F Förster, S Bohn… - Proceedings of the …, 2012 - National Acad Sciences
The 26S proteasome is at the executive end of the ubiquitin-proteasome pathway for the
controlled degradation of intracellular proteins. While the structure of its 20S core particle …

Molecular architecture of the 40S⋅ eIF1⋅ eIF3 translation initiation complex

JP Erzberger, F Stengel, R Pellarin, S Zhang… - Cell, 2014 - cell.com
Eukaryotic translation initiation requires the recruitment of the large, multiprotein eIF3
complex to the 40S ribosomal subunit. We present X-ray structures of all major components …