Variation in the mutation rate across mammalian genomes

A Hodgkinson, A Eyre-Walker - Nature reviews genetics, 2011 - nature.com
It has been known for many years that the mutation rate varies across the genome. However,
only with the advent of large genomic data sets is the full extent of this variation becoming …

Biased gene conversion and the evolution of mammalian genomic landscapes

L Duret, N Galtier - Annual review of genomics and human …, 2009 - annualreviews.org
Recombination is typically thought of as a symmetrical process resulting in large-scale
reciprocal genetic exchanges between homologous chromosomes. Recombination events …

Mutation bias reflects natural selection in Arabidopsis thaliana

JG Monroe, T Srikant, P Carbonell-Bejerano, C Becker… - Nature, 2022 - nature.com
Since the first half of the twentieth century, evolutionary theory has been dominated by the
idea that mutations occur randomly with respect to their consequences. Here we test this …

Detection of nonneutral substitution rates on mammalian phylogenies

KS Pollard, MJ Hubisz, KR Rosenbloom… - Genome …, 2010 - genome.cshlp.org
Methods for detecting nucleotide substitution rates that are faster or slower than expected
under neutral drift are widely used to identify candidate functional elements in genomic …

Most mammalian mRNAs are conserved targets of microRNAs

RC Friedman, KKH Farh, CB Burge… - Genome research, 2009 - genome.cshlp.org
MicroRNAs (miRNAs) are small endogenous RNAs that pair to sites in mRNAs to direct post-
transcriptional repression. Many sites that match the miRNA seed (nucleotides 2–7) …

Chromatin organization is a major influence on regional mutation rates in human cancer cells

B Schuster-Böckler, B Lehner - nature, 2012 - nature.com
Cancer genome sequencing provides the first direct information on how mutation rates vary
across the human genome in somatic cells,,,,,,. Testing diverse genetic and epigenetic …

Initial sequencing and analysis of the human genome

US DOE Joint Genome Institute: Hawkins Trevor 4 … - Nature, 2001 - nature.com
The human genome holds an extraordinary trove of information about human development,
physiology, medicine and evolution. Here we report the results of an international …

Epigenetic modifications affect the rate of spontaneous mutations in a pathogenic fungus

M Habig, C Lorrain, A Feurtey, J Komluski… - Nature …, 2021 - nature.com
Mutations are the source of genetic variation and the substrate for evolution. Genome-wide
mutation rates appear to be affected by selection and are probably adaptive. Mutation rates …

Initial sequencing and comparative analysis of the mouse genome

European Bioinformatics Institute: Birney Ewan 3 … - Nature, 2002 - nature.com
The sequence of the mouse genome is a key informational tool for understanding the
contents of the human genome and a key experimental tool for biomedical research. Here …

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

A Siepel, G Bejerano, JS Pedersen… - Genome …, 2005 - genome.cshlp.org
We have conducted a comprehensive search for conserved elements in vertebrate
genomes, using genome-wide multiple alignments of five vertebrate species (human …