High throughput sequencing for plant virus detection and discovery

DEV Villamor, T Ho, M Al Rwahnih, RR Martin… - …, 2019 - Am Phytopath Society
Over the last decade, virologists have discovered an unprecedented number of viruses
using high throughput sequencing (HTS), which led to the advancement of our knowledge …

Small RNA-omics for plant virus identification, virome reconstruction, and antiviral defense characterization

MM Pooggin - Frontiers in microbiology, 2018 - frontiersin.org
RNA interference (RNAi)-based antiviral defense generates small interfering RNAs that
represent the entire genome sequences of both RNA and DNA viruses as well as viroids …

Investigation of host range of and host defense against a mitochondrially replicating mitovirus

S Shahi, A Eusebio-Cope, H Kondo, BI Hillman… - Journal of …, 2019 - Am Soc Microbiol
ABSTRACT Mitoviruses (genus Mitovirus, family Narnaviridae) are mitochondrially
replicating viruses that have the simplest positive-sense RNA genomes of 2.2 to 4.4 kb with …

miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale

T Fehlmann, F Kern, O Laham, C Backes… - Nucleic acids …, 2021 - academic.oup.com
Analyzing all features of small non-coding RNA sequencing data can be demanding and
challenging. To facilitate this process, we developed miRMaster. After the analysis of over …

Identification of an RNA silencing suppressor encoded by a symptomless fungal hypovirus, Cryphonectria Hypovirus 4

A Aulia, K Hyodo, S Hisano, H Kondo, BI Hillman… - Biology, 2021 - mdpi.com
Simple Summary Host antiviral defense/viral counter-defense is an interesting topic in
modern virology. RNA silencing is the primary antiviral mechanism in insects, plants, and …

Transcriptome and small RNAome profiling uncovers how a recombinant begomovirus evades RDRγ-mediated silencing of viral genes and outcompetes its parental …

M Jammes, V Golyaev, A Fuentes, N Laboureau… - PLoS …, 2024 - journals.plos.org
Tomato yellow leaf curl virus (TYLCV, genus Begomovirus, family Geminiviridae) causes
severe disease of cultivated tomatoes. Geminiviruses replicate circular single-stranded …

SAGA complex mediates the transcriptional up-regulation of antiviral RNA silencing

IB Andika, A Jamal, H Kondo… - Proceedings of the …, 2017 - National Acad Sciences
Pathogen recognition and transcriptional activation of defense-related genes are crucial
steps in cellular defense responses. RNA silencing (RNAi) functions as an antiviral defense …

Exogenous Application of dsRNA for the Control of Viruses in Cucurbits

J Delgado-Martín, L Ruiz, D Janssen… - Frontiers in Plant …, 2022 - frontiersin.org
The recurrent emergence of viral diseases in intensive horticultural crops requires
alternative control strategies. The topical application of double-stranded RNA (dsRNA) …

Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves

V Golyaev, T Candresse, F Rabenstein, MM Pooggin - Scientific reports, 2019 - nature.com
In plants, RNA interference (RNAi) generates small interfering (si) RNAs from entire
genomes of viruses, satellites and viroids. Therefore, deep small (s) RNA sequencing is a …

Replication of single viruses across the kingdoms, Fungi, Plantae, and Animalia

P Telengech, K Hyodo, H Ichikawa… - Proceedings of the …, 2024 - National Acad Sciences
It is extremely rare that a single virus crosses host barriers across multiple kingdoms. Based
on phylogenetic and paleovirological analyses, it has previously been hypothesized that …