Pioneer factors as master regulators of the epigenome and cell fate

A Balsalobre, J Drouin - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Pioneer factors are transcription factors with the unique ability to initiate opening of closed
chromatin. The stability of cell identity relies on robust mechanisms that maintain the …

Chromatin accessibility and the regulatory epigenome

SL Klemm, Z Shipony, WJ Greenleaf - Nature Reviews Genetics, 2019 - nature.com
Physical access to DNA is a highly dynamic property of chromatin that plays an essential
role in establishing and maintaining cellular identity. The organization of accessible …

[HTML][HTML] The human transcription factors

SA Lambert, A Jolma, LF Campitelli, PK Das, Y Yin… - Cell, 2018 - cell.com
Transcription factors (TFs) recognize specific DNA sequences to control chromatin and
transcription, forming a complex system that guides expression of the genome. Despite keen …

The BAF chromatin remodeler synergizes with RNA polymerase II and transcription factors to evict nucleosomes

S Brahma, S Henikoff - Nature genetics, 2024 - nature.com
Chromatin accessibility is a hallmark of active transcription and entails ATP-dependent
nucleosome remodeling, which is carried out by complexes such as Brahma-associated …

AP-1 transcription factors and the BAF complex mediate signal-dependent enhancer selection

T Vierbuchen, E Ling, CJ Cowley, CH Couch, X Wang… - Molecular cell, 2017 - cell.com
Enhancer elements are genomic regulatory sequences that direct the selective expression
of genes so that genetically identical cells can differentiate and acquire the highly …

[HTML][HTML] Histone modifications regulate pioneer transcription factor cooperativity

KK Sinha, S Bilokapic, Y Du, D Malik, M Halic - Nature, 2023 - nature.com
Pioneer transcription factors have the ability to access DNA in compacted chromatin.
Multiple transcription factors can bind together to a regulatory element in a cooperative way …

Single-nucleus genomics in outbred rats with divergent cocaine addiction-like behaviors reveals changes in amygdala GABAergic inhibition

JL Zhou, G de Guglielmo, AJ Ho, M Kallupi… - Nature …, 2023 - nature.com
The amygdala processes positive and negative valence and contributes to addiction, but the
cell-type-specific gene regulatory programs involved are unknown. We generated an atlas of …

Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation

KJ Brennan, M Weilert, S Krueger, A Pampari, H Liu… - Developmental cell, 2023 - cell.com
Chromatin accessibility is integral to the process by which transcription factors (TFs) read out
cis-regulatory DNA sequences, but it is difficult to differentiate between TFs that drive …

The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells

HW King, RJ Klose - Elife, 2017 - elifesciences.org
Pioneer transcription factors recognise and bind their target sequences in inaccessible
chromatin to establish new transcriptional networks throughout development and cellular …

Functions of estrogen and estrogen receptor signaling on skeletal muscle

K Ikeda, K Horie-Inoue, S Inoue - The Journal of steroid biochemistry and …, 2019 - Elsevier
Activity of estrogen, a sex steroid hormone, is not only limited to the reproductive organs but
also involves other organs and tissues, including skeletal muscle. In postmenopausal …