[HTML][HTML] Cryo-electron microscopy for structural analysis of dynamic biological macromolecules

K Murata, M Wolf - Biochimica et Biophysica Acta (BBA)-General Subjects, 2018 - Elsevier
Background Since the introduction of what became today's standard for cryo-embedding of
biological macromolecules at native conditions more than 30 years ago, techniques and …

High-resolution in situ structure determination by cryo-electron tomography and subtomogram averaging using emClarity

T Ni, T Frosio, L Mendonça, Y Sheng, D Clare… - Nature protocols, 2022 - nature.com
Cryo-electron tomography and subtomogram averaging (STA) has developed rapidly in
recent years. It provides structures of macromolecular complexes in situ and in cellular …

emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging

BA Himes, P Zhang - Nature methods, 2018 - nature.com
Macromolecular complexes are intrinsically flexible and often challenging to purify for
structure determination by single-particle cryo-electron microscopy (cryo-EM). Such …

Stimulus sensing and signal processing in bacterial chemotaxis

S Bi, V Sourjik - Current opinion in microbiology, 2018 - Elsevier
Motile bacteria use chemotaxis to migrate towards environments that are favorable for
growth and survival. The signaling pathway that mediates this behavior is largely conserved …

QwikMD—integrative molecular dynamics toolkit for novices and experts

JV Ribeiro, RC Bernardi, T Rudack, JE Stone… - Scientific reports, 2016 - nature.com
The proper functioning of biomolecules in living cells requires them to assume particular
structures and to undergo conformational changes. Both biomolecular structure and motion …

Structure and activity of particulate methane monooxygenase arrays in methanotrophs

Y Zhu, CW Koo, CK Cassidy, MC Spink, T Ni… - Nature …, 2022 - nature.com
Methane-oxidizing bacteria play a central role in greenhouse gas mitigation and have
potential applications in biomanufacturing. Their primary metabolic enzyme, particulate …

[HTML][HTML] Advances in cryo-electron tomography and subtomogram averaging and classification

P Zhang - Current opinion in structural biology, 2019 - Elsevier
Highlights•Cryo-electron tomography (cryoET) subtomogram averaging has emerged as a
structural biology method for sparse and heterogenerous sampls.•CryoET subtomogram …

Toward high-resolution in situ structural biology with cryo-electron tomography and subtomogram averaging

FKM Schur - Current opinion in structural biology, 2019 - Elsevier
Highlights•Cryo-ET and subtomogram averaging allow visualizing macromolecular
complexes in close to physiological conditions.•This offers a significant potential for in situ …

Simulating protein–ligand binding with neural network potentials

SLJ Lahey, CN Rowley - Chemical science, 2020 - pubs.rsc.org
Drug molecules adopt a range of conformations both in solution and in their protein-bound
state. The strain and reduced flexibility of bound drugs can partially counter the …

Assigning chemoreceptors to chemosensory pathways in Pseudomonas aeruginosa

DR Ortega, AD Fleetwood, T Krell… - Proceedings of the …, 2017 - National Acad Sciences
In contrast to Escherichia coli, a model organism for chemotaxis that has 5 chemoreceptors
and a single chemosensory pathway, Pseudomonas aeruginosa PAO1 has a much more …