Accessing complex crop genomes with next-generation sequencing

D Edwards, J Batley, RJ Snowdon - Theoretical and Applied Genetics, 2013 - Springer
Many important crop species have genomes originating from ancestral or recent
polyploidisation events. Multiple homoeologous gene copies, chromosomal rearrangements …

Impact of genomic technologies on chickpea breeding strategies

PM Gaur, AK Jukanti, RK Varshney - Agronomy, 2012 - mdpi.com
The major abiotic and biotic stresses that adversely affect yield of chickpea (Cicer arietinum
L.) include drought, heat, fusarium wilt, ascochyta blight and pod borer. Excellent progress …

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

International Wheat Genome Sequencing Consortium … - Science, 2014 - science.org
An ordered draft sequence of the 17-gigabase hexaploid bread wheat (Triticum aestivum)
genome has been produced by sequencing isolated chromosome arms. We have annotated …

The pangenome of hexaploid bread wheat

JD Montenegro, AA Golicz, PE Bayer… - The Plant …, 2017 - Wiley Online Library
There is an increasing understanding that variation in gene presence–absence plays an
important role in the heritability of agronomic traits; however, there have been relatively few …

Genome interplay in the grain transcriptome of hexaploid bread wheat

M Pfeifer, KG Kugler, SR Sandve, B Zhan, H Rudi… - Science, 2014 - science.org
Allohexaploid bread wheat (Triticum aestivum L.) provides approximately 20% of calories
consumed by humans. Lack of genome sequence for the three homeologous and highly …

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

M Trick, NM Adamski, SG Mugford, CC Jiang… - BMC plant biology, 2012 - Springer
Background Next generation sequencing (NGS) technologies are providing new ways to
accelerate fine-mapping and gene isolation in many species. To date, the majority of these …

[HTML][HTML] Re-discovering ancient wheat varieties as functional foods

R Cooper - Journal of traditional and complementary medicine, 2015 - Elsevier
With the gluten-free food market worth almost $1.6 bn in 2011, there is every reason for
renewed interest in ancient grains. This resurgent interest is expressed in re-discovering …

Application of molecular markers to wheat breeding in C anada

HS Randhawa, M Asif, C Pozniak, JM Clarke… - Plant …, 2013 - Wiley Online Library
Marker‐assisted breeding provides an opportunity for wheat breeders to introgress/pyramid
genes of interest into breeding lines and to identify genes and/or quantitative trait loci in …

Next‐generation sequencing and syntenic integration of flow‐sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

P Hernandez, M Martis, G Dorado, M Pfeifer… - The Plant …, 2012 - Wiley Online Library
Wheat is the third most important crop for human nutrition in the world. The availability of
high‐resolution genetic and physical maps and ultimately a complete genome sequence …

Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes

PE Bayer, J Petereit, É Durant, C Monat… - The Plant …, 2022 - Wiley Online Library
Bread wheat (Triticum aestivum L.) is one of humanity's most important staple crops,
characterized by a large and complex genome with a high level of gene presence–absence …