Reactive force field-based molecular dynamics simulations on the thermal stability of trimesic acid on graphene: implications for the design of supramolecular …

DK Jacquelín, FA Soria… - ACS Applied Nano …, 2021 - ACS Publications
In this work, we used the ReaxFF force field to investigate the dynamics of different network
structures of trimesic acid (TMA) molecules on graphene as a function of temperature. We …

Thermodynamics of self-assembled molecular layers of trimesic acid from fields-supported kinetic Monte Carlo simulation

EA Ustinov, VA Gorbunov, SS Akimenko - … Chemistry Chemical Physics, 2022 - pubs.rsc.org
In this study we present a thermodynamic analysis of several self-assembled molecular
layers of trimesic acid (TMA), gas–solid and solid–solid transitions in such layers using the …

Tensor renormalization group study of orientational ordering in simple models of adsorption monolayers

VA Gorbunov, AI Uliankina, SS Akimenko… - Physical Review E, 2023 - APS
A simple lattice model of the orientational ordering in organic adsorption layers that
considers the directionality of intermolecular interactions is proposed. The symmetry and the …

Thermodynamics of rigid self-assembled crystals: molecular simulation of two-phase systems under external fields

EA Ustinov, VA Gorbunov… - The Journal of Physical …, 2021 - ACS Publications
A general methodology for determining the thermodynamic characteristics of orientationally
ordered rigid crystals is presented. The basic problem here is associated with a very small …

Room-temperature surface-assisted reactivity of a melanin precursor: silver metal–organic coordination versus covalent dimerization on gold

F De Marchi, G Galeotti, M Simenas, EE Tornau… - Nanoscale, 2018 - pubs.rsc.org
The ability of catecholamines to undergo oxidative self-polymerization provides an attractive
route for preparation of coatings for biotechnology and biomedicine applications. However …

Tensor renormalization group study of hard-disk models on a triangular lattice

SS Akimenko, VA Gorbunov, AV Myshlyavtsev… - Physical Review E, 2019 - APS
High accuracy and performance of the tensor renormalization group (TRG) method have
been demonstrated for the model of hard disks on a triangular lattice. We considered a …

Simple lattice model of self-assembling metal–organic layers of pyridyl-substituted porphyrins and copper on Au (111) surface

AI Fadeeva, VA Gorbunov… - Physical Chemistry …, 2021 - pubs.rsc.org
A simple lattice model of metal–organic adsorption layers self-assembling on a Au (111)
surface and based on pyridyl-substituted porphyrins differing in the number of functional …

Tensor network construction for lattice gas models: Hard-core and triangular lattice models

SS Akimenko - Physical Review E, 2023 - APS
The representation of complex lattice models in the form of a tensor network is a promising
approach to the analysis of the thermodynamics of such systems. Once the tensor network is …

SuSMoST: Surface Science Modeling and Simulation Toolkit

SS Akimenko, GD Anisimova… - Journal of …, 2020 - Wiley Online Library
We present to the scientific community the Surface Science Modeling and Simulation Toolkit
(SuSMoST), which includes a number of utilities and implementations of statistical physics …

Equilibrium structure of a dense trimesic acid monolayer on a homogeneous solid surface: from atomistic simulation to thermodynamics

SS Akimenko, VA Gorbunov, EA Ustinov - … Chemistry Chemical Physics, 2023 - pubs.rsc.org
A general methodology for determining the thermodynamic characteristics of rigid organic
crystals on the atomistic level is presented. The proposed approach is based on a …