Genetic models of human and mouse dendritic cell development and function

DA Anderson III, CA Dutertre, F Ginhoux… - Nature Reviews …, 2021 - nature.com
Dendritic cells (DCs) develop in the bone marrow from haematopoietic progenitors that have
numerous shared characteristics between mice and humans. Human counterparts of mouse …

From haematopoietic stem cells to complex differentiation landscapes

E Laurenti, B Göttgens - Nature, 2018 - nature.com
The development of mature blood cells from haematopoietic stem cells has long served as a
model for stem-cell research, with the haematopoietic differentiation tree being widely used …

Live-seq enables temporal transcriptomic recording of single cells

W Chen, O Guillaume-Gentil, PY Rainer, CG Gäbelein… - Nature, 2022 - nature.com
Single-cell transcriptomics (scRNA-seq) has greatly advanced our ability to characterize
cellular heterogeneity. However, scRNA-seq requires lysing cells, which impedes further …

The emergence of transcriptional identity in somatosensory neurons

N Sharma, K Flaherty, K Lezgiyeva, DE Wagner… - Nature, 2020 - nature.com
More than twelve morphologically and physiologically distinct subtypes of primary
somatosensory neuron report salient features of our internal and external environments,,–. It …

Characterization of cell fate probabilities in single-cell data with Palantir

M Setty, V Kiseliovas, J Levine, A Gayoso… - Nature …, 2019 - nature.com
Single-cell RNA sequencing studies of differentiating systems have raised fundamental
questions regarding the discrete versus continuous nature of both differentiation and cell …

Human haematopoietic stem cell lineage commitment is a continuous process

L Velten, SF Haas, S Raffel, S Blaszkiewicz, S Islam… - Nature cell …, 2017 - nature.com
Blood formation is believed to occur through stepwise progression of haematopoietic stem
cells (HSCs) following a tree-like hierarchy of oligo-, bi-and unipotent progenitors. However …

Challenges and emerging directions in single-cell analysis

GC Yuan, L Cai, M Elowitz, T Enver, G Fan, G Guo… - Genome biology, 2017 - Springer
Single-cell analysis is a rapidly evolving approach to characterize genome-scale molecular
information at the individual cell level. Development of single-cell technologies and …

Challenges in measuring and understanding biological noise

N Eling, MD Morgan, JC Marioni - Nature Reviews Genetics, 2019 - nature.com
Biochemical reactions are intrinsically stochastic, leading to variation in the production of
mRNAs and proteins within cells. In the scientific literature, this source of variation is typically …

A BaSiC tool for background and shading correction of optical microscopy images

T Peng, K Thorn, T Schroeder, L Wang, FJ Theis… - Nature …, 2017 - nature.com
Quantitative analysis of bioimaging data is often skewed by both shading in space and
background variation in time. We introduce BaSiC, an image correction method based on …

Interrogation of human hematopoiesis at single-cell and single-variant resolution

JC Ulirsch, CA Lareau, EL Bao, LS Ludwig, MH Guo… - Nature …, 2019 - nature.com
Widespread linkage disequilibrium and incomplete annotation of cell-to-cell state variation
represent substantial challenges to elucidating mechanisms of trait-associated genetic …