Artificial intelligence for multimodal data integration in oncology

J Lipkova, RJ Chen, B Chen, MY Lu, M Barbieri… - Cancer cell, 2022 - cell.com
In oncology, the patient state is characterized by a whole spectrum of modalities, ranging
from radiology, histology, and genomics to electronic health records. Current artificial …

Advances in spatial transcriptomic data analysis

R Dries, J Chen, N Del Rossi, MM Khan… - Genome …, 2021 - genome.cshlp.org
Spatial transcriptomics is a rapidly growing field that promises to comprehensively
characterize tissue organization and architecture at the single-cell or subcellular resolution …

Federated learning in medicine: facilitating multi-institutional collaborations without sharing patient data

MJ Sheller, B Edwards, GA Reina, J Martin, S Pati… - Scientific reports, 2020 - nature.com
Several studies underscore the potential of deep learning in identifying complex patterns,
leading to diagnostic and prognostic biomarkers. Identifying sufficiently large and diverse …

Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning

A Hering, L Hansen, TCW Mok… - … on Medical Imaging, 2022 - ieeexplore.ieee.org
Image registration is a fundamental medical image analysis task, and a wide variety of
approaches have been proposed. However, only a few studies have comprehensively …

Virtual alignment of pathology image series for multi-gigapixel whole slide images

CD Gatenbee, AM Baker, S Prabhakaran… - Nature …, 2023 - nature.com
Interest in spatial omics is on the rise, but generation of highly multiplexed images remains
challenging, due to cost, expertise, methodical constraints, and access to technology. An …

A survey on artificial intelligence in histopathology image analysis

MM Abdelsamea, U Zidan, Z Senousy… - … : Data Mining and …, 2022 - Wiley Online Library
The increasing adoption of the whole slide image (WSI) technology in histopathology has
dramatically transformed pathologists' workflow and allowed the use of computer systems in …

Artificial intelligence reveals features associated with breast cancer neoadjuvant chemotherapy responses from multi-stain histopathologic images

Z Huang, W Shao, Z Han, AM Alkashash… - NPJ Precision …, 2023 - nature.com
Advances in computational algorithms and tools have made the prediction of cancer patient
outcomes using computational pathology feasible. However, predicting clinical outcomes …

Deep learning-inferred multiplex immunofluorescence for immunohistochemical image quantification

P Ghahremani, Y Li, A Kaufman, R Vanguri… - Nature machine …, 2022 - nature.com
Reporting biomarkers assessed by routine immunohistochemical (IHC) staining of tissue is
broadly used in diagnostic pathology laboratories for patient care. So far, however, clinical …

A comprehensive review of federated learning for COVID‐19 detection

S Naz, KT Phan, YPP Chen - International Journal of Intelligent …, 2022 - Wiley Online Library
Abstract The coronavirus of 2019 (COVID‐19) was declared a global pandemic by World
Health Organization in March 2020. Effective testing is crucial to slow the spread of the …

[HTML][HTML] Computational pathology: a survey review and the way forward

MS Hosseini, BE Bejnordi, VQH Trinh, L Chan… - Journal of Pathology …, 2024 - Elsevier
Abstract Computational Pathology (CPath) is an interdisciplinary science that augments
developments of computational approaches to analyze and model medical histopathology …