Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash
Sketching methods offer computational biologists scalable techniques to analyze data sets
that continue to grow in size. MinHash is one such technique to estimate set similarity that …
that continue to grow in size. MinHash is one such technique to estimate set similarity that …
A comparative evaluation of hybrid error correction methods for error-prone long reads
S Fu, A Wang, KF Au - Genome biology, 2019 - Springer
Background Third-generation sequencing technologies have advanced the progress of the
biological research by generating reads that are substantially longer than second …
biological research by generating reads that are substantially longer than second …
Accurate self-correction of errors in long reads using de Bruijn graphs
Motivation New long read sequencing technologies, like PacBio SMRT and Oxford
NanoPore, can produce sequencing reads up to 50 000 bp long but with an error rate of at …
NanoPore, can produce sequencing reads up to 50 000 bp long but with an error rate of at …
Objective review of de novo stand‐alone error correction methods for NGS data
The sequencing market has increased steadily over the last few years, with different
approaches to read DNA information prone to different types of errors. Multiple studies …
approaches to read DNA information prone to different types of errors. Multiple studies …
Debiasing fracminhash and deriving confidence intervals for mutation rates across a wide range of evolutionary distances
Sketching methods offer computational biologists scalable techniques to analyze data sets
that continue to grow in size. MinHash is one such technique to estimate set similarity that …
that continue to grow in size. MinHash is one such technique to estimate set similarity that …
Toll protein family structure, evolution and response of the whiteleg shrimp (Litopenaeus vannamei) to exogenous iridescent virus
H Liu, S Guo, Y He, Q Shi, M Yang… - Journal of Fish …, 2021 - Wiley Online Library
Whiteleg shrimp is a widely cultured crustacean, but frequent disease outbreaks have
decreased production and caused significant losses. Toll‐like receptors (TLRs) comprise a …
decreased production and caused significant losses. Toll‐like receptors (TLRs) comprise a …
A hybrid and scalable error correction algorithm for indel and substitution errors of long reads
Background Long-read sequencing has shown the promises to overcome the short length
limitations of second-generation sequencing by providing more complete assembly …
limitations of second-generation sequencing by providing more complete assembly …
LRCstats, a tool for evaluating long reads correction methods
Motivation Third-generation sequencing (TGS) platforms that generate long reads, such as
PacBio and Oxford Nanopore technologies, have had a dramatic impact on genomics …
PacBio and Oxford Nanopore technologies, have had a dramatic impact on genomics …
Efficient hybrid De novo error correction and assembly for long reads
The new generation of long reads generated by Oxford nanopore sequencing technology
has revolutionized the next generation sequencing environment with the appearance of its …
has revolutionized the next generation sequencing environment with the appearance of its …
An error correction and DeNovo assembly approach for nanopore reads using short reads
Background: Error Correction is an important task in the analysis and manipulations of NGS
data. The purpose of error correction is to facilitate data analysis for large projects like de …
data. The purpose of error correction is to facilitate data analysis for large projects like de …