Recognition in the domain of molecular chirality: from noncovalent interactions to separation of enantiomers

P Peluso, B Chankvetadze - Chemical Reviews, 2022 - ACS Publications
It is not a coincidence that both chirality and noncovalent interactions are ubiquitous in
nature and synthetic molecular systems. Noncovalent interactivity between chiral molecules …

Cooperativity in noncovalent interactions

AS Mahadevi, GN Sastry - Chemical reviews, 2016 - ACS Publications
After conquering the atomic structure about a century ago, chemists have been largely
interested in understanding the concept of chemical bond and the formation of a molecule …

Experimental binding energies in supramolecular complexes

F Biedermann, HJ Schneider - Chemical reviews, 2016 - ACS Publications
On the basis of many literature measurements, a critical overview is given on essential
noncovalent interactions in synthetic supramolecular complexes, accompanied by analyses …

Complete protein–protein association kinetics in atomic detail revealed by molecular dynamics simulations and Markov modelling

N Plattner, S Doerr, G De Fabritiis, F Noé - Nature chemistry, 2017 - nature.com
Protein–protein association is fundamental to many life processes. However, a microscopic
model describing the structures and kinetics during association and dissociation is lacking …

Understand spiciness: mechanism of TRPV1 channel activation by capsaicin

F Yang, J Zheng - Protein & cell, 2017 - Springer
Capsaicin in chili peppers bestows the sensation of spiciness. Since the discovery of its
receptor, transient receptor potential vanilloid 1 (TRPV1) ion channel, how capsaicin …

Anatomy of hot spots in protein interfaces

AA Bogan, KS Thorn - Journal of molecular biology, 1998 - Elsevier
Binding of one protein to another is involved in nearly all biological functions, yet the
principles governing the interaction of proteins are not fully understood. To analyze the …

The atomic structure of protein-protein recognition sites

LL Conte, C Chothia, J Janin - Journal of molecular biology, 1999 - Elsevier
The non-covalent assembly of proteins that fold separately is central to many biological
processes, and differs from the permanent macromolecular assembly of protein subunits in …

Insights into protein–protein binding by binding free energy calculation and free energy decomposition for the Ras–Raf and Ras–RalGDS complexes

H Gohlke, C Kiel, DA Case - Journal of molecular biology, 2003 - Elsevier
Absolute binding free energy calculations and free energy decompositions are presented for
the protein–protein complexes H-Ras/C-Raf1 and H-Ras/RalGDS. Ras is a central switch in …

Evolutionarily conserved pathways of energetic connectivity in protein families

SW Lockless, R Ranganathan - Science, 1999 - science.org
For mapping energetic interactions in proteins, a technique was developed that uses
evolutionary data for a protein family to measure statistical interactions between amino acid …

Fundamental aspects of protein− protein association kinetics

G Schreiber, G Haran, HX Zhou - Chemical reviews, 2009 - ACS Publications
The structure of a protein complex together with information about its affinity and other
thermodynamic characteristics provide a “frozen” view of the complex. This picture ignores …