Bulked sample analysis in genetics, genomics and crop improvement

C Zou, P Wang, Y Xu - Plant biotechnology journal, 2016 - Wiley Online Library
Biological assay has been based on analysis of all individuals collected from sample
populations. Bulked sample analysis (BSA), which works with selected and pooled …

Overview of Biotic Stresses in Pepper (Capsicum spp.): Sources of Genetic Resistance, Molecular Breeding and Genomics

M Parisi, D Alioto, P Tripodi - International Journal of Molecular Sciences, 2020 - mdpi.com
Pepper (Capsicum spp.) is one of the major vegetable crops grown worldwide largely
appreciated for its economic importance and nutritional value. This crop belongs to the large …

Challenges and Strategies for Breeding Resistance in Capsicum annuum to the Multifarious Pathogen, Phytophthora capsici

DW Barchenger, KH Lamour, PW Bosland - Frontiers in plant science, 2018 - frontiersin.org
Phytophthora capsici is the most devastating pathogen for chile pepper production
worldwide and current management strategies are not effective. The population structure of …

Genomics and marker-assisted improvement of vegetable crops

I Simko, M Jia, J Venkatesh, BC Kang… - Critical Reviews in …, 2021 - Taylor & Francis
Vegetables are an integral part of the human diet worldwide. Traditional breeding
approaches have been used extensively to develop new cultivars of vegetables with …

Identifying candidate genes for Phytophthora capsici resistance in pepper (Capsicum annuum) via genotyping-by-sequencing-based QTL mapping and genome …

MI Siddique, HY Lee, NY Ro, K Han, J Venkatesh… - Scientific Reports, 2019 - nature.com
Phytophthora capsici (Leon.) is a globally prevalent, devastating oomycete pathogen that
causes root rot in pepper (Capsicum annuum). Several studies have identified quantitative …

QTL mapping of kernel traits and validation of a major QTL for kernel length-width ratio using SNP and bulked segregant analysis in wheat

F Xin, T Zhu, S Wei, Y Han, Y Zhao, D Zhang, L Ma… - Scientific reports, 2020 - nature.com
One RIL population derived from the cross between Dalibao and BYL8 was used to examine
the phenotypes of kernel-related traits in four different environments. Six important kernel …

Genome-Wide Association Study of Resistance to Phytophthora capsici in the Pepper (Capsicum spp.) Collection

N Ro, M Haile, O Hur, B Geum, J Rhee… - Frontiers in Plant …, 2022 - frontiersin.org
One of the most serious pepper diseases is Phytophthora blight, which is caused by
Phytophthora capsici. It is crucial to assess the resistance of pepper genetic resources to …

A major QTL and candidate genes for capsaicinoid biosynthesis in the pericarp of Capsicum chinense revealed using QTL-seq and RNA-seq

M Park, JH Lee, K Han, S Jang, J Han, JH Lim… - Theoretical and Applied …, 2019 - Springer
Key message A major QTL and candidate genes controlling capsaicinoid content in the
pericarp were identified by QTL-seq and RNA-seq in Capsicum chinense. Abstract …

A combined BSA-Seq and linkage mapping approach identifies genomic regions associated with Phytophthora root and crown rot resistance in squash

G Vogel, KE LaPlant, M Mazourek, MA Gore… - Theoretical and Applied …, 2021 - Springer
Key message Two QTL mapping approaches were used to identify a total of six QTL
associated with Phytophthora root and crown rot resistance in a biparental squash …

Identifying Plasmopara viticola resistance Loci in grapevine (Vitis amurensis) via genotyping-by-sequencing-based QTL mapping

P Fu, W Wu, G Lai, R Li, Y Peng, B Yang… - Plant Physiology and …, 2020 - Elsevier
Downy mildew, caused by Plasmopara viticola, is a major disease that affects grapevines,
and a few resistance (R) genes have been identified thus far. In order to identify R genes, we …