Optical tweezers in single-molecule biophysics

CJ Bustamante, YR Chemla, S Liu… - Nature Reviews Methods …, 2021 - nature.com
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …

Thermostability, tunability, and tenacity of RNA as rubbery anionic polymeric materials in nanotechnology and nanomedicine—specific cancer targeting with …

DW Binzel, X Li, N Burns, E Khan, WJ Lee… - Chemical …, 2021 - ACS Publications
RNA nanotechnology is the bottom-up self-assembly of nanometer-scale architectures,
resembling LEGOs, composed mainly of RNA. The ideal building material should be (1) …

Live-cell super-resolved PAINT imaging of piconewton cellular traction forces

JM Brockman, H Su, AT Blanchard, Y Duan, T Meyer… - Nature …, 2020 - nature.com
Despite the vital role of mechanical forces in biology, it still remains a challenge to image
cellular force with sub-100-nm resolution. Here, we present tension points accumulation for …

Single-molecule analysis and engineering of DNA motors

S Mohapatra, CT Lin, XA Feng, A Basu, T Ha - Chemical reviews, 2019 - ACS Publications
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …

Force-induced site-specific enzymatic cleavage probes reveal that serial mechanical engagement boosts T cell activation

J Rogers, R Ma, A Foote, Y Hu… - Journal of the American …, 2024 - ACS Publications
The T cell membrane is studded with> 104 T cell receptors (TCRs) that are used to scan
target cells to identify short peptide fragments associated with viral infection or cancerous …

The stability and number of nucleating interactions determine DNA hybridization rates in the absence of secondary structure

S Hertel, RE Spinney, SY Xu, TE Ouldridge… - Nucleic Acids …, 2022 - academic.oup.com
The kinetics of DNA hybridization are fundamental to biological processes and DNA-based
technologies. However, the precise physical mechanisms that determine why different DNA …

High-throughput single-molecule quantification of individual base stacking energies in nucleic acids

J Abraham Punnoose, KJ Thomas… - Nature …, 2023 - nature.com
Base stacking interactions between adjacent bases in DNA and RNA are important for many
biological processes and in biotechnology applications. Previous work has estimated …

Ultraspecific and amplification-free quantification of mutant DNA by single-molecule kinetic fingerprinting

SL Hayward, PE Lund, Q Kang… - Journal of the …, 2018 - ACS Publications
Conventional techniques for detecting rare DNA sequences require many cycles of PCR
amplification for high sensitivity and specificity, potentially introducing significant biases and …

Transient states during the annealing of mismatched and bulged oligonucleotides

M Todisco, D Ding, JW Szostak - Nucleic Acids Research, 2024 - academic.oup.com
Oligonucleotide hybridization is crucial in various biological, prebiotic and
nanotechnological processes, including gene regulation, non-enzymatic primer extension …

Low cost and massively parallel force spectroscopy with fluid loading on a chip

E Akbari, M Shahhosseini, A Robbins… - Nature …, 2022 - nature.com
Current approaches for single molecule force spectroscopy are typically constrained by low
throughput and high instrumentation cost. Herein, a low-cost, high throughput technique is …