Synthetic biology to access and expand nature's chemical diversity

MJ Smanski, H Zhou, J Claesen, B Shen… - Nature Reviews …, 2016 - nature.com
Bacterial genomes encode the biosynthetic potential to produce hundreds of thousands of
complex molecules with diverse applications, from medicine to agriculture and materials …

Principles of genetic circuit design

JAN Brophy, CA Voigt - Nature methods, 2014 - nature.com
Cells navigate environments, communicate and build complex patterns by initiating gene
expression in response to specific signals. Engineers seek to harness this capability to …

Continuous evolution of base editors with expanded target compatibility and improved activity

BW Thuronyi, LW Koblan, JM Levy, WH Yeh… - Nature …, 2019 - nature.com
Base editors use DNA-modifying enzymes targeted with a catalytically impaired CRISPR
protein to precisely install point mutations. Here, we develop phage-assisted continuous …

Systematic characterization of maturation time of fluorescent proteins in living cells

E Balleza, JM Kim, P Cluzel - Nature methods, 2018 - nature.com
The slow maturation time of fluorescent proteins (FPs) limits the temporal accuracy of
measurements of rapid processes such as gene expression dynamics and effectively …

Adaptive evolution of virulence and persistence in carbapenem-resistant Klebsiella pneumoniae

CM Ernst, JR Braxton, CA Rodriguez-Osorio… - Nature medicine, 2020 - nature.com
Among the most urgent public health threats is the worldwide emergence of carbapenem-
resistant Enterobacteriaceae,,–, which are resistant to the antibiotic class of 'last resort'. In …

Two-step pathway for isoprenoid synthesis

AO Chatzivasileiou, V Ward… - Proceedings of the …, 2019 - National Acad Sciences
Isoprenoids comprise a large class of chemicals of significant interest due to their diverse
properties. Biological production of isoprenoids is considered to be the most efficient way for …

Precise and reliable gene expression via standard transcription and translation initiation elements

VK Mutalik, JC Guimaraes, G Cambray, C Lam… - Nature …, 2013 - nature.com
An inability to reliably predict quantitative behaviors for novel combinations of genetic
elements limits the rational engineering of biological systems. We developed an expression …

Genetic circuit design automation for yeast

Y Chen, S Zhang, EM Young, TS Jones… - Nature …, 2020 - nature.com
Cells can be programmed to monitor and react to their environment using genetic circuits.
Design automation software maps a desired circuit function to a DNA sequence, a process …

Synthetic circuits integrating logic and memory in living cells

P Siuti, J Yazbek, TK Lu - Nature biotechnology, 2013 - nature.com
Logic and memory are essential functions of circuits that generate complex, state-dependent
responses. Here we describe a strategy for efficiently assembling synthetic genetic circuits …

Control theory meets synthetic biology

D Del Vecchio, AJ Dy, Y Qian - Journal of The Royal …, 2016 - royalsocietypublishing.org
The past several years have witnessed an increased presence of control theoretic concepts
in synthetic biology. This review presents an organized summary of how these control …