Hardware Acceleration of Identifying Barcodes in Multiplexed Nanopore Sequencing
W Hu, Y Zhang, H Zhang, W Chen - Electronics, 2022 - mdpi.com
In multiplexed sequencing, the identification of DNA sequencing barcodes can effectively
reduce the probability of sample misassignment. However, the great quantity of sequence …
reduce the probability of sample misassignment. However, the great quantity of sequence …
An Energy-Efficient Pipelined-Multiprocessor Architecture for Biological Sequence Alignment
A Sarkar, S Banerjee, S Ghosh - IEEE Transactions on Very …, 2020 - ieeexplore.ieee.org
Biological sequence alignment procedure demands an accurate, high speed, and efficient
system to align sequences due to exponential growth of genomic databases. Several …
system to align sequences due to exponential growth of genomic databases. Several …
Fpga implementation of dna sequence alignment with traceback
A Sarkar, S Banerjee - 2020 4th International Conference on …, 2020 - ieeexplore.ieee.org
An FPGA-based improved sequence alignment architecture is introduced in this manuscript.
This paper clearly expresses a straightforward design of the hardware architecture of …
This paper clearly expresses a straightforward design of the hardware architecture of …
[PDF][PDF] Accelerated gpu based protein sequence alignment–an optimized database sequences approach
Smith-Waterman (SW) algorithm is the perfect sequence alignment method for the biological
database but practically this algorithm lacks pace due to high computational complexity …
database but practically this algorithm lacks pace due to high computational complexity …
Reference-guided genome sequencing
J Kinney - US Patent 11,837,330, 2023 - Google Patents
Methods and systems for processing a plurality of sample reads for genome sequencing
include, for each sample read of the plurality of sample reads, comparing substring …
include, for each sample read of the plurality of sample reads, comparing substring …
Reference-guided genome sequencing
J Kinney - US Patent 12,006,539, 2024 - Google Patents
Methods and systems for processing a plurality of sample reads for genome sequencing
include, for each sample read of the plurality of sample reads, comparing substring …
include, for each sample read of the plurality of sample reads, comparing substring …