Machine learning applications for mass spectrometry-based metabolomics

UW Liebal, ANT Phan, M Sudhakar, K Raman… - Metabolites, 2020 - mdpi.com
The metabolome of an organism depends on environmental factors and intracellular
regulation and provides information about the physiological conditions. Metabolomics helps …

Applications of machine learning in metabolomics: Disease modeling and classification

A Galal, M Talal, A Moustafa - Frontiers in genetics, 2022 - frontiersin.org
Metabolomics research has recently gained popularity because it enables the study of
biological traits at the biochemical level and, as a result, can directly reveal what occurs in a …

A comparative evaluation of the generalised predictive ability of eight machine learning algorithms across ten clinical metabolomics data sets for binary classification

KM Mendez, SN Reinke, DI Broadhurst - Metabolomics, 2019 - Springer
Introduction Metabolomics is increasingly being used in the clinical setting for disease
diagnosis, prognosis and risk prediction. Machine learning algorithms are particularly …

The metabolomics of human aging: Advances, challenges, and opportunities

DJ Panyard, B Yu, MP Snyder - Science Advances, 2022 - science.org
As the global population becomes older, understanding the impact of aging on health and
disease becomes paramount. Recent advancements in multiomic technology have allowed …

Recent trends in application of chemometric methods for GC-MS and GCŨGC-MS-based metabolomic studies

N Feizi, FS Hashemi-Nasab, F Golpelichi… - TrAC Trends in …, 2021 - Elsevier
Metabolomics is the science of studying small molecules (metabolites) in biological systems
with the aim of getting insight into cells, biofluids and organisms. Chemometric methods are …

[HTML][HTML] Deep metabolome: Applications of deep learning in metabolomics

Y Pomyen, K Wanichthanarak, P Poungsombat… - Computational and …, 2020 - Elsevier
In the past few years, deep learning has been successfully applied to various omics data.
However, the applications of deep learning in metabolomics are still relatively low compared …

Deep learning meets metabolomics: a methodological perspective

P Sen, S Lamichhane, VB Mathema… - Briefings in …, 2021 - academic.oup.com
Deep learning (DL), an emerging area of investigation in the fields of machine learning and
artificial intelligence, has markedly advanced over the past years. DL techniques are being …

MassGenie: A transformer-based deep learning method for identifying small molecules from their mass spectra

AD Shrivastava, N Swainston, S Samanta, I Roberts… - Biomolecules, 2021 - mdpi.com
The 'inverse problem'of mass spectrometric molecular identification ('given a mass spectrum,
calculate/predict the 2D structure of the molecule whence it came') is largely unsolved, and …

NMR signal processing, prediction, and structure verification with machine learning techniques

C Cobas - Magnetic Resonance in Chemistry, 2020 - Wiley Online Library
Abstract Machine learning (ML) methods have been present in the field of NMR since
decades, but it has experienced a tremendous growth in the last few years, especially …

Chemometric applications in metabolomic studies using chromatography-mass spectrometry

A Paul, P de Boves Harrington - TrAC Trends in Analytical Chemistry, 2021 - Elsevier
Metabolomic studies generate large and exceptionally complex datasets. The chemical
diversity that exists within the metabolome presents an immense analytical challenge …