Sources, resolution and physiological relevance of R-loops and RNA–DNA hybrids

E Petermann, L Lan, L Zou - Nature reviews Molecular cell biology, 2022 - nature.com
RNA–DNA hybrids are generated during transcription, DNA replication and DNA repair and
are crucial intermediates in these processes. When RNA–DNA hybrids are stably formed in …

Targeting telomeres: advances in telomere maintenance mechanism-specific cancer therapies

J Gao, HA Pickett - Nature Reviews Cancer, 2022 - nature.com
Cancer cells establish replicative immortality by activating a telomere-maintenance
mechanism (TMM), be it telomerase or the alternative lengthening of telomeres (ALT) …

Walking a tightrope: the complex balancing act of R-loops in genome stability

JR Brickner, JL Garzon, KA Cimprich - Molecular cell, 2022 - cell.com
Although transcription is an essential cellular process, it is paradoxically also a well-
recognized cause of genomic instability. R-loops, non-B DNA structures formed when …

TERRA and RAD51AP1 promote alternative lengthening of telomeres through an R-to D-loop switch

T Yadav, JM Zhang, J Ouyang, W Leung, A Simoneau… - Molecular cell, 2022 - cell.com
Alternative lengthening of telomeres (ALT), a telomerase-independent process maintaining
telomeres, is mediated by break-induced replication (BIR). RAD52 promotes ALT by …

Phase separation properties of RPA combine high-affinity ssDNA binding with dynamic condensate functions at telomeres

V Spegg, A Panagopoulos, M Stout… - Nature Structural & …, 2023 - nature.com
RPA has been shown to protect single-stranded DNA (ssDNA) intermediates from instability
and breakage. RPA binds ssDNA with sub-nanomolar affinity, yet dynamic turnover is …

R-loops as Janus-faced modulators of DNA repair

A Marnef, G Legube - Nature cell biology, 2021 - nature.com
R-loops are non-B DNA structures with intriguing dual consequences for gene expression
and genome stability. In addition to their recognized roles in triggering DNA double-strand …

DDM1-mediated R-loop resolution and H2A. Z exclusion facilitates heterochromatin formation in Arabidopsis

J Zhou, X Lei, S Shafiq, W Zhang, Q Li, K Li, J Zhu… - Science …, 2023 - science.org
Programmed constitutive heterochromatin silencing is essential for eukaryotic genome
regulation, yet the initial step of this process is ambiguous. A large proportion of R-loops …

ATRX, a guardian of chromatin

P Aguilera, AJ López-Contreras - Trends in Genetics, 2023 - cell.com
ATRX (alpha-thalassemia mental retardation X-linked) is one of the most frequently mutated
tumor suppressor genes in human cancers, especially in glioma, and recent findings …

RNA biogenesis and RNA metabolism factors as R-loop suppressors: a hidden role in genome integrity

R Luna, B Gómez-González… - Genes & …, 2024 - genesdev.cshlp.org
Genome integrity relies on the accuracy of DNA metabolism, but as appreciated for more
than four decades, transcription enhances mutation and recombination frequencies. More …

The FANCM-BLM-TOP3A-RMI complex suppresses alternative lengthening of telomeres (ALT)

R Lu, JJ O'Rourke, AP Sobinoff, JAM Allen… - Nature …, 2019 - nature.com
The collapse of stalled replication forks is a major driver of genomic instability. Several
committed mechanisms exist to resolve replication stress. These pathways are particularly …