Recent advances in network-based methods for disease gene prediction

SK Ata, M Wu, Y Fang, L Ou-Yang… - Briefings in …, 2021 - academic.oup.com
Disease–gene association through genome-wide association study (GWAS) is an arduous
task for researchers. Investigating single nucleotide polymorphisms that correlate with …

Network propagation for GWAS analysis: a practical guide to leveraging molecular networks for disease gene discovery

G Visonà, E Bouzigon, F Demenais… - Briefings in …, 2024 - academic.oup.com
Motivation Genome-wide association studies (GWAS) have enabled large-scale analysis of
the role of genetic variants in human disease. Despite impressive methodological advances …

Network proximity-based drug repurposing strategy for early and late stages of primary biliary cholangitis

E Shahini, G Pasculli, A Mastropietro, P Stolfi, P Tieri… - Biomedicines, 2022 - mdpi.com
Primary biliary cholangitis (PBC) is a chronic, cholestatic, immune-mediated, and
progressive liver disorder. Treatment to preventing the disease from advancing into later and …

A Review of Random Walk-Based Method for the Identification of Disease Genes and Disease Modules

TX Hui, S Kasim, MFM Fudzee, T Sutikno… - IEEE …, 2023 - ieeexplore.ieee.org
Traditional techniques for identifying disease genes and disease modules involve high-cost
clinical experiments and unpredictable time consumption for analysis. Network-based …

PheSom: a term frequency-based method for measuring human phenotype similarity on the basis of MeSH vocabulary

X Liu, L Gao, Y Peng, Z Fang, J Wang - Frontiers in Genetics, 2023 - frontiersin.org
Background: Phenotype similarity calculation should be used to help improve drug
repurposing. In this study, based on the MeSH terms describing the phenotypes deposited in …

[PDF][PDF] A Review of Random Walk-Based Method for the Identification of Disease Genes and Disease Modules

M ALHARBI, SC SEN - 2023 - eprints.utm.my
Traditional techniques for identifying disease genes and disease modules involve high-cost
clinical experiments and unpredictable time consumption for analysis. Network-based …

Topology association analysis in weighted protein interaction network for gene prioritization

S Wu, F Shao, Q Zhang, J Ji, S Xu, R Sun, G Sun… - Physica A: Statistical …, 2016 - Elsevier
Although lots of algorithms for disease gene prediction have been proposed, the weights of
edges are rarely taken into account. In this paper, the strengths of topology associations …

Disease gene discovery of single-gene disorders based on complex network

C Xing, S Wu, F Shao, R Sun - Proceedings of the 3rd IEEE/ACM …, 2016 - dl.acm.org
In recent years, with the development of high-throughput technologies and the increase of
omics data, molecular diagnostics and the analysis of patients' exact causative genes …

Learning graph representations for disease gene prediction

KS Ata - 2019 - dr.ntu.edu.sg
The analysis of disease-causing conditions based on genes and their protein products plays
a crucial role in the diagnosis and treatment of several serious diseases such as cancer and …

[PDF][PDF] Analyzing multicellular interactions: A hybrid computational and biological pattern recognition approach

D White - 2015 - core.ac.uk
I would like to acknowledge my two thesis advisors for making my trip through graduate
school possible. Todd McDevitt and Melissa Kemp provided me with the freedom to pursue …