DNA confinement in nanochannels: physics and biological applications

W Reisner, JN Pedersen… - Reports on progress in …, 2012 - iopscience.iop.org
DNA is the central storage molecule of genetic information in the cell, and reading that
information is a central problem in biology. While sequencing technology has made …

Beyond gel electrophoresis: Microfluidic separations, fluorescence burst analysis, and DNA stretching

KD Dorfman, SB King, DW Olson, JDP Thomas… - Chemical …, 2013 - ACS Publications
This Review addresses methods for obtaining sequence information directly from
unamplified genomic length DNA. Our generic starting point is a large piece of DNA that …

Simulation of DNA extension in nanochannels

Y Wang, DR Tree, KD Dorfman - Macromolecules, 2011 - ACS Publications
We have used a realistic model for double-stranded DNA and Monte Carlo simulations to
compute the extension (mean span) of a DNA molecule confined in a nanochannel over the …

DNA in nanochannels: theory and applications

K Frykholm, V Müller, KK Sriram… - Quarterly Reviews of …, 2022 - cambridge.org
Nanofluidic structures have over the last two decades emerged as a powerful platform for
detailed analysis of DNA on the kilobase pair length scale. When DNA is confined to a …

The polymer physics of single DNA confined in nanochannels

L Dai, CB Renner, PS Doyle - Advances in colloid and interface science, 2016 - Elsevier
In recent years, applications and experimental studies of DNA in nanochannels have
stimulated the investigation of the polymer physics of DNA in confinement. Recent advances …

Single-molecule optical genome mapping in nanochannels: multidisciplinarity at the nanoscale

J Jeffet, S Margalit, Y Michaeli… - Essays in …, 2021 - portlandpress.com
The human genome contains multiple layers of information that extend beyond the genetic
sequence. In fact, identical genetics do not necessarily yield identical phenotypes as evident …

Beyond sequencing: optical mapping of DNA in the age of nanotechnology and nanoscopy

M Levy-Sakin, Y Ebenstein - Current opinion in biotechnology, 2013 - Elsevier
Next generation sequencing (NGS) is revolutionizing all fields of biological research but it
fails to extract the full range of information associated with genetic material. Optical mapping …

Extension of DNA in a nanochannel as a rod-to-coil transition

DR Tree, Y Wang, KD Dorfman - Physical review letters, 2013 - APS
DNA confinement in nanochannels is emerging as an important tool for genomics and an
excellent platform for testing the theories of confined wormlike polymers. Using cutting-edge …

A systematic study of DNA conformation in slitlike confinement

L Dai, JJ Jones, JRC van der Maarel, PS Doyle - Soft Matter, 2012 - pubs.rsc.org
DNA conformation in slitlike confinement is studied using Monte Carlo simulation and
scaling theory. We focus on analysing the in-plane DNA extension as a function of slit height …

Polymers under confinement: single polymers, how they interact, and as model chromosomes

BY Ha, Y Jung - Soft Matter, 2015 - pubs.rsc.org
How confinement or a physical constraint modifies polymer chains is not only a classical
problem in polymer physics but also relevant in a variety of contexts such as single-molecule …