Molecular recognition in chemical and biological systems

E Persch, O Dumele, F Diederich - … Chemie International Edition, 2015 - Wiley Online Library
Abstract Structure‐based ligand design in medicinal chemistry and crop protection relies on
the identification and quantification of weak noncovalent interactions and understanding the …

Recent developments in structure-based drug design

G Klebe - Journal of molecular medicine, 2000 - Springer
Structure-based design has emerged as a new tool in medicinal chemistry. A prerequisite for
this new approach is an understanding of the principles of molecular recognition in protein …

Fluorine Bonding How Does It Work In Protein− Ligand Interactions?

P Zhou, J Zou, F Tian, Z Shang - Journal of chemical information …, 2009 - ACS Publications
Although fluorination of pharmacologically active compounds has long been a common
strategy to increase their metabolic stability and membrane permeation, the functionality of …

Steroids in molecular recognition

P Wallimann, T Marti, A Fürer, F Diederich - Chemical reviews, 1997 - ACS Publications
Steroids are found in all eucaryotic organisms and display a great variety of different
biological functions. 1 The most frequent steroid is the highly lipophilic cholesterol (1, Figure …

Applications of fluorine to the construction of bioisosteric elements for the purposes of novel drug discovery

P Richardson - Expert Opinion on Drug Discovery, 2021 - Taylor & Francis
Introduction There continues to be an exponential rise in the number of small molecule
drugs that contain either a fluorine atom or a fluorinated fragment. While the unique …

A Fluorine Scan of Thrombin Inhibitors to Map the Fluorophilicity/Fluorophobicity of an Enzyme Active Site: Evidence for C F⋅⋅⋅ C O Interactions

JA Olsen, DW Banner, P Seiler… - Angewandte Chemie …, 2003 - Wiley Online Library
The modulation of pharmacokinetic properties by fluorine substitution has become a well-
established strategy for lead optimization [1] and has resulted in a large number (ca. 150) of …

Fluorine Interactions at the Thrombin Active Site: Protein Backbone Fragments HCαCO Comprise a Favorable CF Environment and Interactions of CF with …

JA Olsen, DW Banner, P Seiler, B Wagner… - …, 2004 - Wiley Online Library
Organic fluorine is rarely found in nature, as evidenced by the small number of known
fluorinated natural products. In contrast, it is abundant in synthetic materials as documented …

Binding affinities for sulfonamide inhibitors with human thrombin using Monte Carlo simulations with a linear response method

DK Jones-Hertzog, WL Jorgensen - Journal of Medicinal …, 1997 - ACS Publications
The binding of sulfonamide inhibitors to human thrombin is examined to evaluate the
viability of calculating free energies of binding, Δ G b, utilizing Monte Carlo (MC) statistical …

Molekulare Erkennung in chemischen und biologischen Systemen

E Persch, O Dumele, F Diederich - Angewandte Chemie, 2015 - Wiley Online Library
Strukturbasiertes Ligandendesign in der medizinischen Chemie und im Pflanzenschutz
beruht auf der Identifizierung und Quantifizierung von schwachen, nichtkovalenten …

Structure-based drug design: exploring the proper filling of apolar pockets at enzyme active sites

M Zürcher, F Diederich - The Journal of organic chemistry, 2008 - ACS Publications
The proper filling of apolar pockets at enzyme active sites is central for increasing binding
activity and selectivity of hits and leads in medicinal chemistry. In our structure-based design …