PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses

R Lanfear, B Calcott, SYW Ho… - Molecular biology and …, 2012 - academic.oup.com
In phylogenetic analyses of molecular sequence data, partitioning involves estimating
independent models of molecular evolution for different sets of sites in a sequence …

Tick mitochondrial genomes: structural characteristics and phylogenetic implications

T Wang, S Zhang, T Pei, Z Yu, J Liu - Parasites & vectors, 2019 - Springer
Ticks are obligate blood-sucking arachnid ectoparasites from the order Acarina, and many
are notorious as vectors of a wide variety of zoonotic pathogens. However, the systematics …

Does the DNA barcoding gap exist?–a case study in blue butterflies (Lepidoptera: Lycaenidae)

M Wiemers, K Fiedler - Frontiers in zoology, 2007 - Springer
Background DNA barcoding, ie the use of a 648 bp section of the mitochondrial gene
cytochrome c oxidase I, has recently been promoted as useful for the rapid identification and …

Between two extremes: mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference

D Rubinoff, BS Holland - Systematic biology, 2005 - academic.oup.com
Recently, the role of mitochondrial DNA (mtDNA) sequences in taxonomy and phylogenetic
inference has become contentious, and two extreme viewpoints have emerged, although, as …

Genomic outposts serve the phylogenomic pioneers: designing novel nuclear markers for genomic DNA extractions of Lepidoptera

N Wahlberg, CW Wheat - Systematic biology, 2008 - academic.oup.com
Increasing the number of characters used in phylogenetic studies is the next crucial step
towards generating robust and stable phylogenetic hypotheses—ie, strongly supported and …

How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets

CP Lin, BN Danforth - Molecular phylogenetics and evolution, 2004 - Elsevier
We analyzed 12 combined mitochondrial and nuclear gene datasets in seven orders of
insects using both equal weights parsimony (to evaluate phylogenetic utility) and Bayesian …

Synergistic effects of combining morphological and molecular data in resolving the phylogeny of butterflies and skippers

N Wahlberg, MF Braby, AVZ Brower… - … of the Royal …, 2005 - royalsocietypublishing.org
Phylogenetic relationships among major clades of butterflies and skippers have long been
controversial, with no general consensus even today. Such lack of resolution is a substantial …

Tinamous and moa flock together: mitochondrial genome sequence analysis reveals independent losses of flight among ratites

MJ Phillips, GC Gibb, EA Crimp, D Penny - Systematic biology, 2010 - academic.oup.com
Ratites are large, flightless birds and include the ostrich, rheas, kiwi, emu, and cassowaries,
along with extinct members, such as moa and elephant birds. Previous phylogenetic …

The root of the mammalian tree inferred from whole mitochondrial genomes

MJ Phillips, D Penny - Molecular phylogenetics and evolution, 2003 - Elsevier
Morphological and molecular data are currently contradictory over the position of
monotremes with respect to marsupial and placental mammals. As part of a re-evaluation of …

[HTML][HTML] A complete time-calibrated multi-gene phylogeny of the European butterflies

M Wiemers, N Chazot, CW Wheat, O Schweiger… - ZooKeys, 2020 - ncbi.nlm.nih.gov
With the aim of supporting ecological analyses in butterflies, the third most species-rich
superfamily of Lepidoptera, this paper presents the first time-calibrated phylogeny of all 496 …