The inflammatory pathogenesis of colorectal cancer

M Schmitt, FR Greten - Nature Reviews Immunology, 2021 - nature.com
The mutational landscape of colorectal cancer (CRC) does not enable predictions to be
made about the survival of patients or their response to therapy. Instead, studying the …

Patient-derived xenograft models in cancer therapy: technologies and applications

Y Liu, W Wu, C Cai, H Zhang, H Shen… - Signal Transduction and …, 2023 - nature.com
Patient-derived xenograft (PDX) models, in which tumor tissues from patients are implanted
into immunocompromised or humanized mice, have shown superiority in recapitulating the …

Patient-derived xenograft (PDX) models, applications and challenges in cancer research

S Abdolahi, Z Ghazvinian, S Muhammadnejad… - Journal of Translational …, 2022 - Springer
The establishing of the first cancer models created a new perspective on the identification
and evaluation of new anti-cancer therapies in preclinical studies. Patient-derived xenograft …

TPM, FPKM, or normalized counts? A comparative study of quantification measures for the analysis of RNA-seq data from the NCI patient-derived models repository

Y Zhao, MC Li, MM Konaté, L Chen, B Das… - Journal of translational …, 2021 - Springer
Background In order to correctly decode phenotypic information from RNA-sequencing
(RNA-seq) data, careful selection of the RNA-seq quantification measure is critical for inter …

Metastatic recurrence in colorectal cancer arises from residual EMP1+ cells

A Cañellas-Socias, C Cortina, X Hernando-Momblona… - Nature, 2022 - nature.com
Abstract Around 30–40% of patients with colorectal cancer (CRC) undergoing curative
resection of the primary tumour will develop metastases in the subsequent years. Therapies …

Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to human prostate cancer progression

S Chen, G Zhu, Y Yang, F Wang, YT Xiao, N Zhang… - Nature cell …, 2021 - nature.com
Prostate cancer shows remarkable clinical heterogeneity, which manifests in spatial and
clonal genomic diversity. By contrast, the transcriptomic heterogeneity of prostate tumours is …

Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer

HO Lee, Y Hong, HE Etlioglu, YB Cho, V Pomella… - Nature …, 2020 - nature.com
Immunotherapy for metastatic colorectal cancer is effective only for mismatch repair-deficient
tumors with high microsatellite instability that demonstrate immune infiltration, suggesting …

Predicting survival from colorectal cancer histology slides using deep learning: A retrospective multicenter study

JN Kather, J Krisam, P Charoentong, T Luedde… - PLoS …, 2019 - journals.plos.org
Background For virtually every patient with colorectal cancer (CRC), hematoxylin–eosin
(HE)–stained tissue slides are available. These images contain quantitative information …

Transforming growth factor-β signaling in immunity and cancer

E Batlle, J Massagué - Immunity, 2019 - cell.com
Transforming growth factor (TGF)-β is a crucial enforcer of immune homeostasis and
tolerance, inhibiting the expansion and function of many components of the immune system …

In search of definitions: Cancer‐associated fibroblasts and their markers

M Nurmik, P Ullmann, F Rodriguez… - … journal of cancer, 2020 - Wiley Online Library
The tumor microenvironment has been identified as one of the driving factors of tumor
progression and invasion. Inside this microenvironment, cancer‐associated fibroblasts …