GTRD: an integrated view of transcription regulation

S Kolmykov, I Yevshin, M Kulyashov… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Gene Transcription Regulation Database (GTRD; http://gtrd. biouml. org/)
contains uniformly annotated and processed NGS data related to gene transcription …

CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

VV Lavrekha, VG Levitsky, AV Tsukanov… - Frontiers in Plant …, 2022 - frontiersin.org
Having DNA-binding profiles for a sufficient number of genome-encoded transcription
factors (TFs) opens up the perspectives for systematic evaluation of the upstream regulators …

Meta-analysis of ChIP-seq datasets through the rank aggregation approach

SK Kolmykov, YV Kondrakhin… - 2020 Cognitive …, 2020 - ieeexplore.ieee.org
Understanding the basic mechanisms of transcription regulation is a major challenge in
modern biology. Regulation of transcription is a complex process in which transcription …

Investigating the role of JARID2 in treatment resistance in glioblastoma

MMH Al-Jabri - 2023 - etheses.whiterose.ac.uk
Glioblastoma (GBM) is the deadliest primary brain tumour in adults with a median survival of
14-20 months from initial diagnosis. Despite aggressive treatment involving maximal …

[PDF][PDF] Организация коллекции цифровых двойников нефтегазонасыщенных коллекторов АТЛАС МФМ

АЮ Соболев, ГВ Нестерова, НМ Черняк… - … двойники и большие …, 2019 - ipgg.sbras.ru
Коллекция цифровых двойников нефтегазонасыщенных коллекторов АТЛАС МФМ
нацелена на построение максимально реалистичной модели, включающей изменение …

Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data

RN Sharipov, YV Kondrakhin, AS Ryabova, IS Yevshin… - Plos one, 2020 - journals.plos.org
Creating a complete picture of the regulation of transcription seems to be an urgent task of
modern biology. Regulation of transcription is a complex process carried out by transcription …

Peak caller comparison through quality control of ChIP-Seq datasets

RN Sharipov, IS Yevshin, YV Kondrakhin… - … of Genome Regulation …, 2020 - elibrary.ru
Chromatin immunoprecipitation followed by high throughput sequencing, ie ChIP-Seq, is a
widely used experimental technology for the identification of functional protein-DNA …

[PDF][PDF] PeaN caller comparison through quality control of ChIP-Seq datasets

SB RAS - publ.icgbio.ru
Chromatin immunoprecipitation followed by high throughput sequencing, ie ChIP-Seq, is a
widely used experimental technology for the identification of functional protein-DNA …

Анализ NGS данных по регуляции транскрипции

СК Колмыков, ИС Евшин, ФА Колпаков - … . Цифровые двойники и …, 2019 - elibrary.ru
База данных GTRD (http://gtrd. biouml. org) содержит более 30000 единообразно
обработанных NGS экспериментов по регуляции транскрипции (СhIP-seq, ChIP-exo …

[PDF][PDF] Analysis of NGS Data on the Transcriptional Regulation

SK Kolmykov, IS Evshin, FA Kolpakov… - CEUR Workshop …, 2019 - ceur-ws.org
The GTRD database (http://gtrd. biouml. org) contains over 30,000 uniformly processed NGS
experiments on transcriptional regulation (ChIP-seq, ChIP-exo, DNase-seq, ATAC-seq …