The pan-immune system of bacteria: antiviral defence as a community resource

A Bernheim, R Sorek - Nature reviews microbiology, 2020 - nature.com
Viruses and their hosts are engaged in a constant arms race leading to the evolution of
antiviral defence mechanisms. Recent studies have revealed that the immune arsenal of …

Understanding bacteriophage tail fiber interaction with host surface receptor: the key “blueprint” for reprogramming phage host range

J Taslem Mourosi, A Awe, W Guo, H Batra… - International Journal of …, 2022 - mdpi.com
Bacteriophages (phages), as natural antibacterial agents, are being rediscovered because
of the growing threat of multi-and pan-drug-resistant bacterial pathogens globally. However …

Diverse enzymatic activities mediate antiviral immunity in prokaryotes

L Gao, H Altae-Tran, F Böhning, KS Makarova, M Segel… - Science, 2020 - science.org
Bacteria and archaea are frequently attacked by viruses and other mobile genetic elements
and rely on dedicated antiviral defense systems, such as restriction endonucleases and …

Broad-spectrum CRISPR-Cas13a enables efficient phage genome editing

BA Adler, T Hessler, BF Cress, A Lahiri, VK Mutalik… - Nature …, 2022 - nature.com
CRISPR-Cas13 proteins are RNA-guided RNA nucleases that defend against incoming
RNA and DNA phages by binding to complementary target phage transcripts followed by …

[HTML][HTML] Dynamic modulation of the gut microbiota and metabolome by bacteriophages in a mouse model

BB Hsu, TE Gibson, V Yeliseyev, Q Liu, L Lyon, L Bry… - Cell host & …, 2019 - cell.com
The human gut microbiome is comprised of densely colonizing microorganisms including
bacteriophages, which are in dynamic interaction with each other and the mammalian host …

Thousands of previously unknown phages discovered in whole-community human gut metagenomes

S Benler, N Yutin, D Antipov, M Rayko, S Shmakov… - Microbiome, 2021 - Springer
Background Double-stranded DNA bacteriophages (dsDNA phages) play pivotal roles in
structuring human gut microbiomes; yet, the gut virome is far from being fully characterized …

Genomically recoded organisms expand biological functions

MJ Lajoie, AJ Rovner, DB Goodman, HR Aerni… - science, 2013 - science.org
We describe the construction and characterization of a genomically recoded organism
(GRO). We replaced all known UAG stop codons in Escherichia coli MG1655 with …

Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire

EV Koonin, KS Makarova, YI Wolf… - Nature Reviews …, 2020 - nature.com
All cellular life forms are afflicted by diverse genetic parasites, including viruses and other
types of mobile genetic elements (MGEs), and have evolved multiple, diverse defence …

Bionanoparticles in cancer imaging, diagnosis, and treatment

Y Li, Q Bao, S Yang, M Yang, C Mao - View, 2022 - Wiley Online Library
Biological molecules such as DNA, proteins, and lipids can be assembled into naturally
existing nanoparticles, such as bacterial viruses (also called bacteriophages or phages) …

Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation

J Ramsey, H Rasche, C Maughmer… - PLOS Computational …, 2020 - journals.plos.org
In the modern genomic era, scientists without extensive bioinformatic training need to apply
high-power computational analyses to critical tasks like phage genome annotation. At the …