Systemic immunometabolism: challenges and opportunities

A Lercher, H Baazim, A Bergthaler - Immunity, 2020 - cell.com
Over the past 10 years, the field of immunometabolism made great strides to unveil the
crucial role of intracellular metabolism in regulating immune cell function. Emerging insights …

Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine

A Heinken, J Hertel, G Acharya, DA Ravcheev… - Nature …, 2023 - nature.com
The human microbiome influences the efficacy and safety of a wide variety of commonly
prescribed drugs. Designing precision medicine approaches that incorporate microbial …

[HTML][HTML] Metabolic modelling approaches for describing and engineering microbial communities

B García-Jiménez, J Torres-Bacete… - Computational and …, 2021 - Elsevier
Microbes do not live in isolation but in microbial communities. The relevance of microbial
communities is increasing due to growing awareness of their influence on a huge number of …

Applied concepts in PBPK modeling: how to build a PBPK/PD model

L Kuepfer, C Niederalt, T Wendl… - CPT …, 2016 - Wiley Online Library
The aim of this tutorial is to introduce the fundamental concepts of physiologically based
pharmacokinetic/pharmacodynamic (PBPK/PD) modeling with a special focus on their …

Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome

I Thiele, S Sahoo, A Heinken, J Hertel… - Molecular systems …, 2020 - embopress.org
Comprehensive molecular‐level models of human metabolism have been generated on a
cellular level. However, models of whole‐body metabolism have not been established as …

Personalized metabolic whole-body models for newborns and infants predict growth and biomarkers of inherited metabolic diseases

E Zaunseder, U Mütze, JG Okun, GF Hoffmann… - Cell Metabolism, 2024 - cell.com
Comprehensive whole-body models (WBMs) accounting for organ-specific dynamics have
been developed to simulate adult metabolism, but such models do not exist for infants. Here …

Metabolic modelling as a framework for metabolomics data integration and analysis

S Volkova, MRA Matos, M Mattanovich, I Marín de Mas - Metabolites, 2020 - mdpi.com
Metabolic networks are regulated to ensure the dynamic adaptation of biochemical reaction
fluxes to maintain cell homeostasis and optimal metabolic fitness in response to …

Can bile salt export pump inhibition testing in drug discovery and development reduce liver injury risk? An international transporter consortium perspective

JG Kenna, KS Taskar, C Battista… - Clinical …, 2018 - Wiley Online Library
Bile salt export pump (BSEP) inhibition has emerged as an important mechanism that may
contribute to the initiation of human drug‐induced liver injury (DILI). Proactive evaluation …

Genome scale metabolic modeling of cancer

A Nilsson, J Nielsen - Metabolic engineering, 2017 - Elsevier
Cancer cells reprogram metabolism to support rapid proliferation and survival. Energy
metabolism is particularly important for growth and genes encoding enzymes involved in …

Multiscale metabolic modeling: dynamic flux balance analysis on a whole-plant scale

E Grafahrend-Belau, A Junker, A Eschenröder… - Plant …, 2013 - academic.oup.com
Plant metabolism is characterized by a unique complexity on the cellular, tissue, and organ
levels. On a whole-plant scale, changing source and sink relations accompanying plant …