The metagenomics of soil

R Daniel - Nature reviews microbiology, 2005 - nature.com
Phylogenetic surveys of soil ecosystems have shown that the number of prokaryotic species
found in a single sample exceeds that of known cultured prokaryotes. Soil metagenomics …

Genomic studies of uncultivated archaea

C Schleper, G Jurgens, M Jonuscheit - Nature Reviews Microbiology, 2005 - nature.com
Archaea represent a considerable fraction of the prokaryotic world in marine and terrestrial
ecosystems, indicating that organisms from this domain might have a large impact on global …

MEGAN analysis of metagenomic data

DH Huson, AF Auch, J Qi, SC Schuster - Genome research, 2007 - genome.cshlp.org
Metagenomics is the study of the genomic content of a sample of organisms obtained from a
common habitat using targeted or random sequencing. Goals include understanding the …

Isolation of an autotrophic ammonia-oxidizing marine archaeon

M Könneke, AE Bernhard, JR de La Torre, CB Walker… - Nature, 2005 - nature.com
For years, microbiologists characterized the Archaea as obligate extremophiles that thrive in
environments too harsh for other organisms. The limited physiological diversity among …

Comparative metagenomics of microbial communities

SG Tringe, C Von Mering, A Kobayashi, AA Salamov… - Science, 2005 - science.org
The species complexity of microbial communities and challenges in culturing representative
isolates make it difficult to obtain assembled genomes. Here we characterize and compare …

Novel genes for nitrite reductase and Amo‐related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling

AH Treusch, S Leininger, A Kletzin… - Environmental …, 2005 - Wiley Online Library
Mesophilic crenarchaeota are frequently found in terrestrial and marine habitats worldwide,
but despite their considerable abundance the physiology of these as yet uncultivated …

Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

T Urich, A Lanzén, J Qi, DH Huson, C Schleper… - PloS one, 2008 - journals.plos.org
Background Soil ecosystems harbor the most complex prokaryotic and eukaryotic microbial
communities on Earth. Experimental approaches studying these systems usually focus on …

Ammonia-oxidising archaea–physiology, ecology and evolution

C Schleper, GW Nicol - Advances in microbial physiology, 2010 - Elsevier
Nitrification is a microbially mediated process that plays a central role in the global cycling of
nitrogen and is also of economic importance in agriculture and wastewater treatment. The …

Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum

SJ Hallam, KT Konstantinidis… - Proceedings of the …, 2006 - National Acad Sciences
Crenarchaeota are ubiquitous and abundant microbial constituents of soils, sediments,
lakes, and ocean waters. To further describe the cosmopolitan nonthermophilic …

Metagenomics, biotechnology with non-culturable microbes

C Schmeisser, H Steele, WR Streit - Applied microbiology and …, 2007 - Springer
Metagenomics as a new field of research has been developed over the past decade to
elucidate the genomes of the non-cultured microbes with the goal to better understand …