Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging

JW Hickey, EK Neumann, AJ Radtke, JM Camarillo… - Nature …, 2022 - nature.com
Tissues and organs are composed of distinct cell types that must operate in concert to
perform physiological functions. Efforts to create high-dimensional biomarker catalogs of …

Nano-DESI mass spectrometry imaging of proteoforms in biological tissues with high spatial resolution

M Yang, D Unsihuay, H Hu, F Nguele Meke… - Analytical …, 2023 - ACS Publications
Mass spectrometry imaging (MSI) is a powerful tool for label-free mapping of the spatial
distribution of proteins in biological tissues. We have previously demonstrated imaging of …

Highly multiplexed, label-free proteoform imaging of tissues by individual ion mass spectrometry

P Su, JP McGee, KR Durbin, MAR Hollas, M Yang… - Science …, 2022 - science.org
Imaging of proteoforms in human tissues is hindered by low molecular specificity and limited
proteome coverage. Here, we introduce proteoform imaging mass spectrometry (PiMS) …

Renal biopsy for diagnosis in kidney disease: Indication, technique, and safety

P Schnuelle - Journal of Clinical Medicine, 2023 - mdpi.com
Renal biopsies are the gold standard for diagnosis, staging, and prognosis of underlying
parenchymal kidney disease. This article provides an overview of the current indications and …

Mapping the spatial proteome of head and neck tumors: key immune mediators and metabolic determinants in the tumor microenvironment

N Jhaveri, B Ben Cheikh, N Nikulina, N Ma… - GEN …, 2023 - liebertpub.com
Head and neck squamous cell carcinomas (HNSCCs) are the seventh most common cancer
and represent a global health burden. Immune checkpoint inhibitors (ICIs) have shown …

[HTML][HTML] Exploring the single-cell immune landscape of kidney allograft inflammation using imaging mass cytometry

MP Alexander, M Zaidi, N Larson, A Mullan… - American Journal of …, 2024 - Elsevier
Kidney allograft inflammation, mostly attributed to rejection and infection, is an important
cause of graft injury and loss. Standard histopathological assessment of allograft …

Consensus tissue domain detection in spatial omics data using multiplex image labeling with regional morphology (MILWRM)

H Kaur, CN Heiser, ET McKinley… - Communications …, 2024 - nature.com
Spatially resolved molecular assays provide high dimensional genetic, transcriptomic,
proteomic, and epigenetic information in situ and at various resolutions. Pairing these data …

Application of spatial-omics to the classification of kidney biopsy samples in transplantation

P Tasca, BM van den Berg, TJ Rabelink… - Nature Reviews …, 2024 - nature.com
Improvement of long-term outcomes through targeted treatment is a primary concern in
kidney transplant medicine. Currently, the validation of a rejection diagnosis and …

Uncovering molecular heterogeneity in the kidney with spatially targeted mass spectrometry

ARS Kruse, JM Spraggins - Frontiers in Physiology, 2022 - frontiersin.org
The kidney functions through the coordination of approximately one million multifunctional
nephrons in 3-dimensional space. Molecular understanding of the kidney has relied on …

Revisiting transplant immunology through the lens of single-cell technologies

A Barbetta, B Rocque, D Sarode, JA Bartlett… - Seminars in …, 2023 - Springer
Solid organ transplantation (SOT) is the standard of care for end-stage organ disease. The
most frequent complication of SOT involves allograft rejection, which may occur via T cell …