Linking plant secondary metabolites and plant microbiomes: a review
Z Pang, J Chen, T Wang, C Gao, Z Li, L Guo… - Frontiers in plant …, 2021 - frontiersin.org
Plant secondary metabolites (PSMs) play many roles including defense against pathogens,
pests, and herbivores; response to environmental stresses, and mediating organismal …
pests, and herbivores; response to environmental stresses, and mediating organismal …
Machine learning for the advancement of genome-scale metabolic modeling
Constraint-based modeling (CBM) has evolved as the core systems biology tool to map the
interrelations between genotype, phenotype, and external environment. The recent …
interrelations between genotype, phenotype, and external environment. The recent …
Insights into ammonia adaptation and methanogenic precursor oxidation by genome-centric analysis
Ammonia released from the degradation of protein and/or urea usually leads to suboptimal
anaerobic digestion (AD) when N-rich organic waste is used. However, the insights behind …
anaerobic digestion (AD) when N-rich organic waste is used. However, the insights behind …
Global-scale structure of the eelgrass microbiome
Plant-associated microorganisms are essential for their hosts' survival and performance. Yet,
most plant microbiome studies to date have focused on terrestrial species sampled across …
most plant microbiome studies to date have focused on terrestrial species sampled across …
[HTML][HTML] From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes
Metagenomic sequencing of complete microbial communities has greatly enhanced our
understanding of the taxonomic composition of microbiotas. This has led to breakthrough …
understanding of the taxonomic composition of microbiotas. This has led to breakthrough …
[HTML][HTML] Metabolic modelling approaches for describing and engineering microbial communities
B García-Jiménez, J Torres-Bacete… - Computational and …, 2021 - Elsevier
Microbes do not live in isolation but in microbial communities. The relevance of microbial
communities is increasing due to growing awareness of their influence on a huge number of …
communities is increasing due to growing awareness of their influence on a huge number of …
Chameleon-like microbes promote microecological differentiation of Daqu
L Yang, W Fan, Y Xu - Food Microbiology, 2023 - Elsevier
Chameleon-like microbes in the fermentation community are an internal factor that facilitate
the transformation of the community to the corresponding homeostasis states under specific …
the transformation of the community to the corresponding homeostasis states under specific …
[HTML][HTML] Metabolic modeling of human gut microbiota on a genome scale: an overview
There is growing interest in the metabolic interplay between the gut microbiome and host
metabolism. Taxonomic and functional profiling of the gut microbiome by next-generation …
metabolism. Taxonomic and functional profiling of the gut microbiome by next-generation …
Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers
Background Links between colorectal cancer (CRC) and the gut microbiome have been
established, but the specific microbial species and their role in carcinogenesis remain an …
established, but the specific microbial species and their role in carcinogenesis remain an …
Revealing metabolic mechanisms of interaction in the anaerobic digestion microbiome by flux balance analysis
Anaerobic digestion is a key biological process for renewable energy, yet the mechanistic
knowledge on its hidden microbial dynamics is still limited. The present work charted the …
knowledge on its hidden microbial dynamics is still limited. The present work charted the …