Marine extinctions and their drivers

A Nikolaou, S Katsanevakis - Regional environmental change, 2023 - Springer
A literature review was conducted to investigate marine global and local extinctions and
their drivers; the review followed the PRISMA-EcoEvo guidelines. The data extracted was …

The mitogenomic contributions to molecular phylogenetics and evolution of fishes: a 15-year retrospect

M Miya, M Nishida - Ichthyological Research, 2015 - Springer
This review summarizes the achievements and novel perspectives that our fish
mitochondrial genome (mitogenome) project has brought to molecular phylogenetics and …

The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing

PA Gagnaire, SA Pavey, E Normandeau… - …, 2013 - academic.oup.com
During speciation-with-gene-flow, effective migration varies across the genome as a function
of several factors, including proximity of selected loci, recombination rate, strength of …

Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)

C Rougeux, L Bernatchez… - Genome biology and …, 2017 - academic.oup.com
Parallel divergence across replicated species pairs occurring in similar environmental
contrasts may arise through distinct evolutionary scenarios. Deciphering whether such …

The impact of the tree prior on molecular dating of data sets containing a mixture of inter-and intraspecies sampling

AM Ritchie, N Lo, SYW Ho - Systematic Biology, 2017 - academic.oup.com
In Bayesian phylogenetic analyses of genetic data, prior probability distributions need to be
specified for the model parameters, including the tree. When Bayesian methods are used for …

Genome assembly, structural variants, and genetic differentiation between lake whitefish young species pairs (Coregonus sp.) with long and short reads

C Mérot, KSR Stenløkk, C Venney, M Laporte… - Molecular …, 2023 - Wiley Online Library
Nascent pairs of ecologically differentiated species offer an opportunity to get a better
glimpse at the genetic architecture of speciation. Of particular interest is our recent ability to …

RNA-seq reveals transcriptomic shock involving transposable elements reactivation in hybrids of young lake whitefish species

AM Dion-Côté, S Renaut, E Normandeau… - Molecular biology …, 2014 - academic.oup.com
Identifying the molecular basis of reproductive isolation among diverging lineages
represents an essential step toward understanding speciation in natural populations …

Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis)

PA Gagnaire, E Normandeau, SA Pavey… - Molecular …, 2013 - Wiley Online Library
The evolution of reproductive isolation in an ecological context may involve multiple facets of
species divergence on which divergent selection may operate. These include variation in …

Identifying designatable units for intraspecific conservation prioritization: a hierarchical approach applied to the lake whitefish species complex (Coregonus spp.)

JA Mee, L Bernatchez, JD Reist… - Evolutionary …, 2015 - Wiley Online Library
The concept of the designatable unit (DU) affords a practical approach to identifying diversity
below the species level for conservation prioritization. However, its suitability for defining …

Mitochondrial genome diversity and population structure of the giant squid Architeuthis: genetics sheds new light on one of the most enigmatic marine species

I Winkelmann, PF Campos… - … of the Royal …, 2013 - royalsocietypublishing.org
Despite its charismatic appeal to both scientists and the general public, remarkably little is
known about the giant squid Architeuthis, one of the largest of the invertebrates. Although …