The stochastic thermodynamics of computation

DH Wolpert - Journal of Physics A: Mathematical and Theoretical, 2019 - iopscience.iop.org
One of the central concerns of computer science is how the resources needed to perform a
given computation depend on that computation. Moreover, one of the major resource …

Reinforcement learning in different phases of quantum control

M Bukov, AGR Day, D Sels, P Weinberg, A Polkovnikov… - Physical Review X, 2018 - APS
The ability to prepare a physical system in a desired quantum state is central to many areas
of physics such as nuclear magnetic resonance, cold atoms, and quantum computing. Yet …

Finite-time Landauer principle

K Proesmans, J Ehrich, J Bechhoefer - Physical Review Letters, 2020 - APS
We study the thermodynamic cost associated with the erasure of one bit of information over
a finite amount of time. We present a general framework for minimizing the average work …

Thermodynamic length in open quantum systems

M Scandi, M Perarnau-Llobet - Quantum, 2019 - quantum-journal.org
The dissipation generated during a quasistatic thermodynamic process can be
characterised by introducing a metric on the space of Gibbs states, in such a way that …

Thermodynamic control—An old paradigm with new applications

S Deffner, MVS Bonança - Europhysics Letters, 2020 - iopscience.iop.org
Tremendous research efforts have been invested in exploring and designing so-called
shortcuts to adiabaticity. These are finite-time processes that produce the same final states …

Beyond Linear Response: Equivalence between Thermodynamic Geometry and Optimal Transport

A Zhong, MR DeWeese - Physical Review Letters, 2024 - APS
A fundamental result of thermodynamic geometry is that the optimal, minimal-work protocol
that drives a nonequilibrium system between two thermodynamic states in the slow-driving …

Biomolecular simulations under realistic macroscopic salt conditions

GA Ross, AS Rustenburg, PB Grinaway… - The Journal of …, 2018 - ACS Publications
Biomolecular simulations are typically performed in an aqueous environment where the
number of ions remains fixed for the duration of the simulation, generally with either a …

NEAT1 modulates the TIRR/53BP1 complex to maintain genome integrity

S Kilgas, A Syed, P Toolan-Kerr, ML Swift… - Nature …, 2024 - nature.com
Abstract Tudor Interacting Repair Regulator (TIRR) is an RNA-binding protein (RBP) that
interacts directly with 53BP1, restricting its access to DNA double-strand breaks (DSBs) and …

Design principles for nonequilibrium self-assembly

M Nguyen, S Vaikuntanathan - Proceedings of the National …, 2016 - National Acad Sciences
We consider an important class of self-assembly problems, and using the formalism of
stochastic thermodynamics, we derive a set of design principles for growing controlled …

Geometric approach to optimal nonequilibrium control: Minimizing dissipation in nanomagnetic spin systems

GM Rotskoff, GE Crooks, E Vanden-Eijnden - Physical Review E, 2017 - APS
Optimal control of nanomagnets has become an urgent problem for the field of spintronics as
technological tools approach thermodynamically determined limits of efficiency. In complex …