Two-photon calcium imaging of neuronal activity

C Grienberger, A Giovannucci, W Zeiger… - Nature Reviews …, 2022 - nature.com
In vivo two-photon calcium imaging (2PCI) is a technique used for recording neuronal
activity in the intact brain. It is based on the principle that, when neurons fire action …

Genetic dissection of neural circuits: a decade of progress

L Luo, EM Callaway, K Svoboda - Neuron, 2018 - cell.com
Tremendous progress has been made since Neuron published our Primer on genetic
dissection of neural circuits 10 years ago. Since then, cell-type-specific anatomical …

Learnable latent embeddings for joint behavioural and neural analysis

S Schneider, JH Lee, MW Mathis - Nature, 2023 - nature.com
Mapping behavioural actions to neural activity is a fundamental goal of neuroscience. As our
ability to record large neural and behavioural data increases, there is growing interest in …

Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy

Z Liu, X Lu, V Villette, Y Gou, KL Colbert, S Lai, S Guan… - Cell, 2022 - cell.com
Genetically encoded voltage indicators are emerging tools for monitoring voltage dynamics
with cell-type specificity. However, current indicators enable a narrow range of applications …

Microglia are dispensable for experience-dependent refinement of mouse visual circuitry

TC Brown, EC Crouse, CA Attaway, DK Oakes… - Nature …, 2024 - nature.com
To test the hypothesized crucial role of microglia in the developmental refinement of neural
circuitry, we depleted microglia from mice of both sexes with PLX5622 and examined the …

Reinforcing neuron extraction and spike inference in calcium imaging using deep self-supervised denoising

X Li, G Zhang, J Wu, Y Zhang, Z Zhao, X Lin, H Qiao… - Nature …, 2021 - nature.com
Calcium imaging has transformed neuroscience research by providing a methodology for
monitoring the activity of neural circuits with single-cell resolution. However, calcium …

A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology

Z Wei, BJ Lin, TW Chen, K Daie… - PLoS computational …, 2020 - journals.plos.org
Calcium imaging with fluorescent protein sensors is widely used to record activity in
neuronal populations. The transform between neural activity and calcium-related …

Multiregion neuronal activity: the forest and the trees

TA Machado, IV Kauvar, K Deisseroth - Nature Reviews Neuroscience, 2022 - nature.com
The past decade has witnessed remarkable advances in the simultaneous measurement of
neuronal activity across many brain regions, enabling fundamentally new explorations of the …

Relationship between simultaneously recorded spiking activity and fluorescence signal in GCaMP6 transgenic mice

L Huang, P Ledochowitsch, U Knoblich, J Lecoq… - Elife, 2021 - elifesciences.org
Fluorescent calcium indicators are often used to investigate neural dynamics, but the
relationship between fluorescence and action potentials (APs) remains unclear. Most APs …

A database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging

P Rupprecht, S Carta, A Hoffmann, M Echizen… - Nature …, 2021 - nature.com
Inference of action potentials ('spikes') from neuronal calcium signals is complicated by the
scarcity of simultaneous measurements of action potentials and calcium signals ('ground …