The evolutionary relationships among organisms have traditionally been represented using
rooted phylogenetic trees. However, due to reticulate processes such as hybridization or …

Dendroscope 3 is a new program for working with rooted phylogenetic trees and networks. It
provides a number of methods for drawing and comparing rooted phylogenetic networks …

The idea that all life on earth traces back to a common origin dates back at least to Charles
Darwin's Origin of Species. Ever since, biologists have tried to piece together parts of this …

Combinatorial structure and algorithms for deducing genetic recombination history,
represented by ancestral recombination graphs and other networks, and their role in the …

Phylogenetic networks generalize phylogenetic trees in order to model reticulation events.
Although the comparison of phylogenetic trees is well studied, and there are multiple ways …

Phylogenetic networks are special graphs that generalize phylogenetic trees to allow for
modeling of non-treelike evolutionary histories. The ability to sequence multiple genetic …

Phylogenetic networks represent the evolution of organisms that have undergone reticulate
events, such as recombination, hybrid speciation or lateral gene transfer. An important way …

Background We present a series of simulation studies that explore the relative performance
of several phylogenetic network approaches (statistical parsimony, split decomposition …

Galled trees are studied as a recombination model in population genetics. This class of
phylogenetic networks is generalized into tree-child and galled network classes by relaxing …

Phylogenetic trees and networks are leaf-labelled graphs that are used to describe
evolutionary histories of species. The Tree Containment problem asks whether a given …